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5CHC
Biol. Unit 3
Info
Asym.Unit (642 KB)
Biol.Unit 1 (220 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (219 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PERCHLORATE REDUCTASE PCRAB - SUBSTRATE ANALOG SEO3 BOUND - FROM AZOSPIRA SUILLUM PS
Authors
:
C. -L. Tsai, J. A. Tainer
Date
:
10 Jul 15 (Deposition) - 09 Mar 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Electron-Shuttling Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Youngblut, C. L. Tsai, I. C. Clark, H. K. Carlson, A. P. Maglaqui, P. S. Gau-Pan, S. A. Redford, A. Wong, J. A. Tainer, J. D. Coates
Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues.
J. Biol. Chem. V. 291 9190 2016
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Hetero Components
(8, 14)
Info
All Hetero Components
1a: BISELENITE ION (BSYa)
1b: BISELENITE ION (BSYb)
1c: BISELENITE ION (BSYc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
3a: FE3-S4 CLUSTER (F3Sa)
3b: FE3-S4 CLUSTER (F3Sb)
3c: FE3-S4 CLUSTER (F3Sc)
4a: GLYCEROL (GOLa)
5a: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1a)
5b: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1b)
5c: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1c)
6a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
6b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
6c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
7a: MOLYBDENUM ATOM (MOa)
7b: MOLYBDENUM ATOM (MOb)
7c: MOLYBDENUM ATOM (MOc)
8a: SODIUM ION (NAa)
8b: SODIUM ION (NAb)
8c: SODIUM ION (NAc)
8d: SODIUM ION (NAd)
8e: SODIUM ION (NAe)
8f: SODIUM ION (NAf)
8g: SODIUM ION (NAg)
8h: SODIUM ION (NAh)
9a: IRON/SULFUR CLUSTER (SF4a)
9b: IRON/SULFUR CLUSTER (SF4b)
9c: IRON/SULFUR CLUSTER (SF4c)
9d: IRON/SULFUR CLUSTER (SF4d)
9e: IRON/SULFUR CLUSTER (SF4e)
9f: IRON/SULFUR CLUSTER (SF4f)
9g: IRON/SULFUR CLUSTER (SF4g)
9h: IRON/SULFUR CLUSTER (SF4h)
9i: IRON/SULFUR CLUSTER (SF4i)
9j: IRON/SULFUR CLUSTER (SF4j)
9k: IRON/SULFUR CLUSTER (SF4k)
9l: IRON/SULFUR CLUSTER (SF4l)
10a: SULFITE ION (SO3a)
10b: SULFITE ION (SO3b)
10c: SULFITE ION (SO3c)
11a: ZINC ION (ZNa)
11b: ZINC ION (ZNb)
11c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BSY
1
Ligand/Ion
BISELENITE ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
4
GOL
1
Ligand/Ion
GLYCEROL
5
MD1
1
Ligand/Ion
PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER
6
MGD
1
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
7
MO
-1
Ligand/Ion
MOLYBDENUM ATOM
8
NA
-1
Ligand/Ion
SODIUM ION
9
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
10
SO3
1
Ligand/Ion
SULFITE ION
11
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AE1 (SOFTWARE)
02: AF9 (SOFTWARE)
03: AH3 (SOFTWARE)
04: AH4 (SOFTWARE)
05: AH5 (SOFTWARE)
06: AH6 (SOFTWARE)
07: AH7 (SOFTWARE)
08: AH8 (SOFTWARE)
09: AH9 (SOFTWARE)
10: AI1 (SOFTWARE)
11: AI2 (SOFTWARE)
12: AI3 (SOFTWARE)
13: AI4 (SOFTWARE)
14: AI5 (SOFTWARE)
15: AI6 (SOFTWARE)
16: AI7 (SOFTWARE)
17: AI8 (SOFTWARE)
18: AI9 (SOFTWARE)
19: AJ1 (SOFTWARE)
20: AJ2 (SOFTWARE)
21: AJ3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AE1
SOFTWARE
TRP A:806 , HOH A:1172 , HOH A:1339 , ARG B:103 , EDO B:409 , GLU E:495 , ASN E:553
binding site for residue EDO A 1019
02
AF9
SOFTWARE
GLU C:495 , ASN C:553 , HOH C:1300 , HOH C:1327 , TRP E:806 , ARG F:103
binding site for residue EDO C 1007
03
AH3
SOFTWARE
HIS E:32 , CYS E:36 , ALA E:39 , CYS E:40 , GLY E:73 , CYS E:74 , GLY E:77 , HOH E:1259
binding site for residue SF4 E 1001
04
AH4
SOFTWARE
ASP E:170 , MGD E:1003 , MD1 E:1004 , BSY E:1008
binding site for residue MO E 1002
05
AH5
SOFTWARE
LYS E:76 , ASP E:170 , TRP E:200 , GLY E:201 , ASN E:203 , GLN E:206 , THR E:207 , ARG E:208 , ILE E:228 , PRO E:230 , ASP E:231 , ASN E:233 , GLY E:248 , ASP E:250 , GLY E:421 , GLY E:422 , GLY E:423 , TRP E:427 , ILE E:458 , GLY E:459 , ASN E:761 , PRO E:763 , HIS E:764 , SER E:765 , ARG E:766 , SER E:768 , VAL E:769 , HIS E:770 , ARG E:830 , ARG E:882 , MO E:1002 , MD1 E:1004 , BSY E:1008 , HOH E:1142 , HOH E:1170 , HOH E:1273
binding site for residue MGD E 1003
06
AH6
SOFTWARE
LEU E:33 , ASN E:35 , TYR E:168 , ASP E:170 , HIS E:426 , TYR E:536 , ARG E:537 , GLY E:538 , ASN E:539 , GLN E:543 , LYS E:545 , ILE E:564 , ASN E:565 , ARG E:567 , ASP E:569 , SER E:581 , TRP E:584 , LYS E:587 , ASP E:615 , SER E:762 , HIS E:764 , VAL E:769 , HIS E:770 , SER E:771 , THR E:772 , HIS E:835 , GLN E:849 , GLN E:881 , ARG E:882 , MO E:1002 , MGD E:1003 , BSY E:1008 , HOH E:1134 , HOH E:1189 , HOH E:1211 , HOH E:1225
binding site for residue MD1 E 1004
07
AH7
SOFTWARE
THR E:185 , LYS E:462 , THR E:593 , SER E:594 , HIS E:596 , ASN E:697 , TYR E:708
binding site for residue EDO E 1005
08
AH8
SOFTWARE
ARG E:107 , GLU E:611 , HOH E:1113 , HOH E:1160 , HOH E:1292
binding site for residue GOL E 1006
09
AH9
SOFTWARE
ARG E:96 , ASP E:576 , HOH E:1206
binding site for residue EDO E 1007
10
AI1
SOFTWARE
ASN E:35 , PHE E:164 , TYR E:165 , TYR E:168 , ASP E:170 , ILE E:458 , GLY E:459 , MO E:1002 , MGD E:1003 , MD1 E:1004
binding site for residue BSY E 1008
11
AI2
SOFTWARE
VAL E:51 , ZN E:1013
binding site for residue SO3 E 1009
12
AI3
SOFTWARE
VAL E:777
binding site for residue NA E 1010
13
AI4
SOFTWARE
GLY E:538 , ASP E:563 , ASN E:565 , ASP E:569
binding site for residue NA E 1011
14
AI5
SOFTWARE
HIS E:128 , GLU E:559
binding site for residue NA E 1012
15
AI6
SOFTWARE
HIS E:81 , SO3 E:1009 , HOH F:565
binding site for residue ZN E 1013
16
AI7
SOFTWARE
CYS F:149 , ASN F:151 , CYS F:170 , LYS F:171 , GLY F:172 , ALA F:173 , GLN F:174 , ALA F:175 , CYS F:176
binding site for residue F3S F 401
17
AI8
SOFTWARE
CYS F:137 , ASN F:138 , CYS F:140 , CYS F:145 , CYS F:180
binding site for residue SF4 F 402
18
AI9
SOFTWARE
CYS F:21 , ILE F:22 , CYS F:24 , GLN F:25 , CYS F:27 , ARG F:47 , CYS F:216 , GLY F:218
binding site for residue SF4 F 403
19
AJ1
SOFTWARE
CYS F:31 , TRP F:35 , ARG F:47 , CYS F:197 , GLY F:199 , CYS F:200 , CYS F:212
binding site for residue SF4 F 404
20
AJ2
SOFTWARE
GLY F:85 , ILE F:86 , PHE F:88 , THR F:109 , PRO F:110 , ARG F:111 , SER F:112
binding site for residue EDO F 405
21
AJ3
SOFTWARE
GLU F:89 , ASP F:91 , ARG F:105 , SER F:107
binding site for residue EDO F 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
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