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5CHC
Biol. Unit 1
Info
Asym.Unit (642 KB)
Biol.Unit 1 (220 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (219 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PERCHLORATE REDUCTASE PCRAB - SUBSTRATE ANALOG SEO3 BOUND - FROM AZOSPIRA SUILLUM PS
Authors
:
C. -L. Tsai, J. A. Tainer
Date
:
10 Jul 15 (Deposition) - 09 Mar 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Electron-Shuttling Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Youngblut, C. L. Tsai, I. C. Clark, H. K. Carlson, A. P. Maglaqui, P. S. Gau-Pan, S. A. Redford, A. Wong, J. A. Tainer, J. D. Coates
Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues.
J. Biol. Chem. V. 291 9190 2016
[
close entry info
]
Hetero Components
(7, 24)
Info
All Hetero Components
1a: BISELENITE ION (BSYa)
1b: BISELENITE ION (BSYb)
1c: BISELENITE ION (BSYc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
3a: FE3-S4 CLUSTER (F3Sa)
3b: FE3-S4 CLUSTER (F3Sb)
3c: FE3-S4 CLUSTER (F3Sc)
4a: GLYCEROL (GOLa)
5a: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1a)
5b: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1b)
5c: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1c)
6a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
6b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
6c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
7a: MOLYBDENUM ATOM (MOa)
7b: MOLYBDENUM ATOM (MOb)
7c: MOLYBDENUM ATOM (MOc)
8a: SODIUM ION (NAa)
8b: SODIUM ION (NAb)
8c: SODIUM ION (NAc)
8d: SODIUM ION (NAd)
8e: SODIUM ION (NAe)
8f: SODIUM ION (NAf)
8g: SODIUM ION (NAg)
8h: SODIUM ION (NAh)
9a: IRON/SULFUR CLUSTER (SF4a)
9b: IRON/SULFUR CLUSTER (SF4b)
9c: IRON/SULFUR CLUSTER (SF4c)
9d: IRON/SULFUR CLUSTER (SF4d)
9e: IRON/SULFUR CLUSTER (SF4e)
9f: IRON/SULFUR CLUSTER (SF4f)
9g: IRON/SULFUR CLUSTER (SF4g)
9h: IRON/SULFUR CLUSTER (SF4h)
9i: IRON/SULFUR CLUSTER (SF4i)
9j: IRON/SULFUR CLUSTER (SF4j)
9k: IRON/SULFUR CLUSTER (SF4k)
9l: IRON/SULFUR CLUSTER (SF4l)
10a: SULFITE ION (SO3a)
10b: SULFITE ION (SO3b)
10c: SULFITE ION (SO3c)
11a: ZINC ION (ZNa)
11b: ZINC ION (ZNb)
11c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BSY
1
Ligand/Ion
BISELENITE ION
2
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
3
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
4
GOL
-1
Ligand/Ion
GLYCEROL
5
MD1
1
Ligand/Ion
PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER
6
MGD
1
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
7
MO
-1
Ligand/Ion
MOLYBDENUM ATOM
8
NA
-1
Ligand/Ion
SODIUM ION
9
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
10
SO3
1
Ligand/Ion
SULFITE ION
11
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:32 , CYS A:36 , CYS A:40 , GLY A:73 , CYS A:74 , HOH A:1336
binding site for residue SF4 A 1001
02
AC2
SOFTWARE
ASP A:170 , MGD A:1003 , MD1 A:1004 , BSY A:1013
binding site for residue MO A 1002
03
AC3
SOFTWARE
ASN A:35 , LYS A:76 , ASP A:170 , TRP A:200 , GLY A:201 , SER A:202 , ASN A:203 , GLN A:206 , THR A:207 , ILE A:228 , PRO A:230 , ASP A:231 , ASN A:233 , GLY A:248 , ASP A:250 , GLY A:421 , GLY A:422 , GLY A:423 , TRP A:427 , ILE A:458 , GLY A:459 , ASN A:761 , PRO A:763 , HIS A:764 , SER A:765 , ARG A:766 , SER A:768 , VAL A:769 , HIS A:770 , ARG A:830 , HIS A:835 , ARG A:882 , MO A:1002 , MD1 A:1004 , BSY A:1013 , HOH A:1130 , HOH A:1148 , HOH A:1197 , HOH A:1221 , HOH A:1287 , HOH A:1301 , HOH A:1326
binding site for residue MGD A 1003
04
AC4
SOFTWARE
LEU A:33 , ASN A:35 , TYR A:168 , ASP A:170 , HIS A:426 , ARG A:537 , GLY A:538 , ASN A:539 , GLN A:543 , ILE A:564 , ASN A:565 , ILE A:566 , ARG A:567 , ASP A:569 , SER A:581 , TRP A:584 , LYS A:587 , ASP A:615 , SER A:762 , HIS A:764 , VAL A:769 , HIS A:770 , SER A:771 , THR A:772 , HIS A:835 , GLN A:849 , GLN A:881 , ARG A:882 , MO A:1002 , MGD A:1003 , BSY A:1013 , HOH A:1210 , HOH A:1240 , HOH A:1251 , HOH A:1254
binding site for residue MD1 A 1004
05
AC5
SOFTWARE
ILE A:243 , HIS A:244 , VAL A:398 , THR A:399 , HOH A:1122 , HOH A:1236
binding site for residue EDO A 1005
06
AC6
SOFTWARE
LYS A:462 , THR A:593 , SER A:594 , HIS A:596 , ASN A:697 , TYR A:708 , HOH A:1151 , HOH A:1193
binding site for residue EDO A 1006
07
AC7
SOFTWARE
PHE A:192 , SER A:194 , ALA A:218 , ASN A:221
binding site for residue EDO A 1007
08
AC8
SOFTWARE
ASN A:804 , PRO A:896 , THR B:109 , PRO B:110
binding site for residue EDO A 1008
09
AC9
SOFTWARE
LYS A:58 , ILE A:60 , ALA A:61 , LYS A:690
binding site for residue EDO A 1009
10
AD1
SOFTWARE
ARG A:96 , GLY A:98 , GLU A:99 , ARG A:100 , GLY A:101 , GLU A:102 , GLY A:103 , LYS A:104 , TRP A:105 , LEU A:573 , SER A:575
binding site for residue EDO A 1010
11
AD2
SOFTWARE
GLU A:495 , ASN A:553 , HOH A:1164 , HOH A:1252 , TRP C:806 , ARG D:103
binding site for residue EDO A 1011
12
AD3
SOFTWARE
SER A:792 , PRO A:793 , ASN A:824 , GLU A:826 , GLU B:124 , TYR B:125 , HOH B:564
binding site for residue EDO A 1012
13
AD4
SOFTWARE
ASN A:35 , VAL A:139 , PHE A:164 , TYR A:165 , TYR A:168 , ASP A:170 , GLY A:459 , MO A:1002 , MGD A:1003 , MD1 A:1004
binding site for residue BSY A 1013
14
AD5
SOFTWARE
VAL A:51 , ZN A:1017 , HOH A:1114 , HOH A:1177
binding site for residue SO3 A 1014
15
AD6
SOFTWARE
VAL A:777
binding site for residue NA A 1015
16
AD7
SOFTWARE
HIS A:128 , GLU A:559 , HOH A:1412
binding site for residue NA A 1016
17
AD8
SOFTWARE
HIS A:81 , SO3 A:1014 , HOH A:1166 , HOH B:506
binding site for residue ZN A 1017
18
AD9
SOFTWARE
PHE A:9 , TYR A:11 , GLU A:15 , ARG B:157 , GLU B:158 , GLN B:159
binding site for residue EDO A 1018
19
AE1
SOFTWARE
TRP A:806 , HOH A:1172 , HOH A:1339 , ARG B:103 , EDO B:409 , GLU E:495 , ASN E:553
binding site for residue EDO A 1019
20
AE2
SOFTWARE
CYS B:149 , ASN B:151 , CYS B:170 , LYS B:171 , GLY B:172 , ALA B:173 , GLN B:174 , ALA B:175 , CYS B:176 , ALA B:194
binding site for residue F3S B 401
21
AE3
SOFTWARE
CYS B:137 , ASN B:138 , CYS B:140 , CYS B:145 , CYS B:180
binding site for residue SF4 B 402
22
AE4
SOFTWARE
CYS B:21 , ILE B:22 , CYS B:24 , GLN B:25 , CYS B:27 , ARG B:47 , CYS B:216 , VAL B:217 , GLY B:218
binding site for residue SF4 B 403
23
AE5
SOFTWARE
TYR B:14 , CYS B:31 , TRP B:35 , ARG B:47 , CYS B:197 , ILE B:198 , GLY B:199 , CYS B:200 , CYS B:212
binding site for residue SF4 B 404
24
AE6
SOFTWARE
ILE B:82 , GLY B:85 , ILE B:86 , PHE B:88 , THR B:109 , PRO B:110 , ARG B:111 , SER B:112
binding site for residue EDO B 405
25
AE7
SOFTWARE
GLY B:102
binding site for residue NA B 406
26
AE8
SOFTWARE
VAL B:223 , SER B:231 , SER B:232 , VAL B:233 , ASP B:326 , MET B:327
binding site for residue EDO B 407
27
AE9
SOFTWARE
PRO A:71 , VAL B:213 , ALA B:214 , CYS B:216 , ARG B:219 , ALA B:220 , MET B:221 , MET B:327 , MET B:328
binding site for residue EDO B 408
28
AF1
SOFTWARE
TRP A:806 , ARG A:819 , ASP A:842 , EDO A:1019 , HOH A:1172 , ARG B:103 , ARG B:105 , PRO B:106
binding site for residue EDO B 409
29
AF2
SOFTWARE
THR B:28 , CYS B:31 , LYS B:32 , THR B:36 , MET B:44 , TYR B:45 , TRP B:46 , ARG B:47
binding site for residue EDO B 410
[
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SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (642 KB)
Header - Asym.Unit
Biol.Unit 1 (220 KB)
Header - Biol.Unit 1
Biol.Unit 2 (216 KB)
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Biol.Unit 3 (219 KB)
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