PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5CHC
Asym. Unit
Info
Asym.Unit (642 KB)
Biol.Unit 1 (220 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (219 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE PERCHLORATE REDUCTASE PCRAB - SUBSTRATE ANALOG SEO3 BOUND - FROM AZOSPIRA SUILLUM PS
Authors
:
C. -L. Tsai, J. A. Tainer
Date
:
10 Jul 15 (Deposition) - 09 Mar 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Electron-Shuttling Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Youngblut, C. L. Tsai, I. C. Clark, H. K. Carlson, A. P. Maglaqui, P. S. Gau-Pan, S. A. Redford, A. Wong, J. A. Tainer, J. D. Coates
Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues.
J. Biol. Chem. V. 291 9190 2016
[
close entry info
]
Hetero Components
(11, 66)
Info
All Hetero Components
01a: BISELENITE ION (BSYa)
01b: BISELENITE ION (BSYb)
01c: BISELENITE ION (BSYc)
02a: 1,2-ETHANEDIOL (EDOa)
02b: 1,2-ETHANEDIOL (EDOb)
02c: 1,2-ETHANEDIOL (EDOc)
02d: 1,2-ETHANEDIOL (EDOd)
02e: 1,2-ETHANEDIOL (EDOe)
02f: 1,2-ETHANEDIOL (EDOf)
02g: 1,2-ETHANEDIOL (EDOg)
02h: 1,2-ETHANEDIOL (EDOh)
02i: 1,2-ETHANEDIOL (EDOi)
02j: 1,2-ETHANEDIOL (EDOj)
02k: 1,2-ETHANEDIOL (EDOk)
02l: 1,2-ETHANEDIOL (EDOl)
02m: 1,2-ETHANEDIOL (EDOm)
02n: 1,2-ETHANEDIOL (EDOn)
02o: 1,2-ETHANEDIOL (EDOo)
02p: 1,2-ETHANEDIOL (EDOp)
02q: 1,2-ETHANEDIOL (EDOq)
02r: 1,2-ETHANEDIOL (EDOr)
02s: 1,2-ETHANEDIOL (EDOs)
02t: 1,2-ETHANEDIOL (EDOt)
02u: 1,2-ETHANEDIOL (EDOu)
02v: 1,2-ETHANEDIOL (EDOv)
02w: 1,2-ETHANEDIOL (EDOw)
02x: 1,2-ETHANEDIOL (EDOx)
03a: FE3-S4 CLUSTER (F3Sa)
03b: FE3-S4 CLUSTER (F3Sb)
03c: FE3-S4 CLUSTER (F3Sc)
04a: GLYCEROL (GOLa)
05a: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1a)
05b: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1b)
05c: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1c)
06a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
06b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
06c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
07a: MOLYBDENUM ATOM (MOa)
07b: MOLYBDENUM ATOM (MOb)
07c: MOLYBDENUM ATOM (MOc)
08a: SODIUM ION (NAa)
08b: SODIUM ION (NAb)
08c: SODIUM ION (NAc)
08d: SODIUM ION (NAd)
08e: SODIUM ION (NAe)
08f: SODIUM ION (NAf)
08g: SODIUM ION (NAg)
08h: SODIUM ION (NAh)
09a: IRON/SULFUR CLUSTER (SF4a)
09b: IRON/SULFUR CLUSTER (SF4b)
09c: IRON/SULFUR CLUSTER (SF4c)
09d: IRON/SULFUR CLUSTER (SF4d)
09e: IRON/SULFUR CLUSTER (SF4e)
09f: IRON/SULFUR CLUSTER (SF4f)
09g: IRON/SULFUR CLUSTER (SF4g)
09h: IRON/SULFUR CLUSTER (SF4h)
09i: IRON/SULFUR CLUSTER (SF4i)
09j: IRON/SULFUR CLUSTER (SF4j)
09k: IRON/SULFUR CLUSTER (SF4k)
09l: IRON/SULFUR CLUSTER (SF4l)
10a: SULFITE ION (SO3a)
10b: SULFITE ION (SO3b)
10c: SULFITE ION (SO3c)
11a: ZINC ION (ZNa)
11b: ZINC ION (ZNb)
11c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BSY
3
Ligand/Ion
BISELENITE ION
2
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
3
F3S
3
Ligand/Ion
FE3-S4 CLUSTER
4
GOL
1
Ligand/Ion
GLYCEROL
5
MD1
3
Ligand/Ion
PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER
6
MGD
3
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
7
MO
3
Ligand/Ion
MOLYBDENUM ATOM
8
NA
8
Ligand/Ion
SODIUM ION
9
SF4
12
Ligand/Ion
IRON/SULFUR CLUSTER
10
SO3
3
Ligand/Ion
SULFITE ION
11
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(66, 66)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:32 , CYS A:36 , CYS A:40 , GLY A:73 , CYS A:74 , HOH A:1336
binding site for residue SF4 A 1001
02
AC2
SOFTWARE
ASP A:170 , MGD A:1003 , MD1 A:1004 , BSY A:1013
binding site for residue MO A 1002
03
AC3
SOFTWARE
ASN A:35 , LYS A:76 , ASP A:170 , TRP A:200 , GLY A:201 , SER A:202 , ASN A:203 , GLN A:206 , THR A:207 , ILE A:228 , PRO A:230 , ASP A:231 , ASN A:233 , GLY A:248 , ASP A:250 , GLY A:421 , GLY A:422 , GLY A:423 , TRP A:427 , ILE A:458 , GLY A:459 , ASN A:761 , PRO A:763 , HIS A:764 , SER A:765 , ARG A:766 , SER A:768 , VAL A:769 , HIS A:770 , ARG A:830 , HIS A:835 , ARG A:882 , MO A:1002 , MD1 A:1004 , BSY A:1013 , HOH A:1130 , HOH A:1148 , HOH A:1197 , HOH A:1221 , HOH A:1287 , HOH A:1301 , HOH A:1326
binding site for residue MGD A 1003
04
AC4
SOFTWARE
LEU A:33 , ASN A:35 , TYR A:168 , ASP A:170 , HIS A:426 , ARG A:537 , GLY A:538 , ASN A:539 , GLN A:543 , ILE A:564 , ASN A:565 , ILE A:566 , ARG A:567 , ASP A:569 , SER A:581 , TRP A:584 , LYS A:587 , ASP A:615 , SER A:762 , HIS A:764 , VAL A:769 , HIS A:770 , SER A:771 , THR A:772 , HIS A:835 , GLN A:849 , GLN A:881 , ARG A:882 , MO A:1002 , MGD A:1003 , BSY A:1013 , HOH A:1210 , HOH A:1240 , HOH A:1251 , HOH A:1254
binding site for residue MD1 A 1004
05
AC5
SOFTWARE
ILE A:243 , HIS A:244 , VAL A:398 , THR A:399 , HOH A:1122 , HOH A:1236
binding site for residue EDO A 1005
06
AC6
SOFTWARE
LYS A:462 , THR A:593 , SER A:594 , HIS A:596 , ASN A:697 , TYR A:708 , HOH A:1151 , HOH A:1193
binding site for residue EDO A 1006
07
AC7
SOFTWARE
PHE A:192 , SER A:194 , ALA A:218 , ASN A:221
binding site for residue EDO A 1007
08
AC8
SOFTWARE
ASN A:804 , PRO A:896 , THR B:109 , PRO B:110
binding site for residue EDO A 1008
09
AC9
SOFTWARE
LYS A:58 , ILE A:60 , ALA A:61 , LYS A:690
binding site for residue EDO A 1009
10
AD1
SOFTWARE
ARG A:96 , GLY A:98 , GLU A:99 , ARG A:100 , GLY A:101 , GLU A:102 , GLY A:103 , LYS A:104 , TRP A:105 , LEU A:573 , SER A:575
binding site for residue EDO A 1010
11
AD2
SOFTWARE
GLU A:495 , ASN A:553 , HOH A:1164 , HOH A:1252 , TRP C:806 , ARG D:103
binding site for residue EDO A 1011
12
AD3
SOFTWARE
SER A:792 , PRO A:793 , ASN A:824 , GLU A:826 , GLU B:124 , TYR B:125 , HOH B:564
binding site for residue EDO A 1012
13
AD4
SOFTWARE
ASN A:35 , VAL A:139 , PHE A:164 , TYR A:165 , TYR A:168 , ASP A:170 , GLY A:459 , MO A:1002 , MGD A:1003 , MD1 A:1004
binding site for residue BSY A 1013
14
AD5
SOFTWARE
VAL A:51 , ZN A:1017 , HOH A:1114 , HOH A:1177
binding site for residue SO3 A 1014
15
AD6
SOFTWARE
VAL A:777
binding site for residue NA A 1015
16
AD7
SOFTWARE
HIS A:128 , GLU A:559 , HOH A:1412
binding site for residue NA A 1016
17
AD8
SOFTWARE
HIS A:81 , SO3 A:1014 , HOH A:1166 , HOH B:506
binding site for residue ZN A 1017
18
AD9
SOFTWARE
PHE A:9 , TYR A:11 , GLU A:15 , ARG B:157 , GLU B:158 , GLN B:159
binding site for residue EDO A 1018
19
AE1
SOFTWARE
TRP A:806 , HOH A:1172 , HOH A:1339 , ARG B:103 , EDO B:409 , GLU E:495 , ASN E:553
binding site for residue EDO A 1019
20
AE2
SOFTWARE
CYS B:149 , ASN B:151 , CYS B:170 , LYS B:171 , GLY B:172 , ALA B:173 , GLN B:174 , ALA B:175 , CYS B:176 , ALA B:194
binding site for residue F3S B 401
21
AE3
SOFTWARE
CYS B:137 , ASN B:138 , CYS B:140 , CYS B:145 , CYS B:180
binding site for residue SF4 B 402
22
AE4
SOFTWARE
CYS B:21 , ILE B:22 , CYS B:24 , GLN B:25 , CYS B:27 , ARG B:47 , CYS B:216 , VAL B:217 , GLY B:218
binding site for residue SF4 B 403
23
AE5
SOFTWARE
TYR B:14 , CYS B:31 , TRP B:35 , ARG B:47 , CYS B:197 , ILE B:198 , GLY B:199 , CYS B:200 , CYS B:212
binding site for residue SF4 B 404
24
AE6
SOFTWARE
ILE B:82 , GLY B:85 , ILE B:86 , PHE B:88 , THR B:109 , PRO B:110 , ARG B:111 , SER B:112
binding site for residue EDO B 405
25
AE7
SOFTWARE
GLY B:102
binding site for residue NA B 406
26
AE8
SOFTWARE
VAL B:223 , SER B:231 , SER B:232 , VAL B:233 , ASP B:326 , MET B:327
binding site for residue EDO B 407
27
AE9
SOFTWARE
PRO A:71 , VAL B:213 , ALA B:214 , CYS B:216 , ARG B:219 , ALA B:220 , MET B:221 , MET B:327 , MET B:328
binding site for residue EDO B 408
28
AF1
SOFTWARE
TRP A:806 , ARG A:819 , ASP A:842 , EDO A:1019 , HOH A:1172 , ARG B:103 , ARG B:105 , PRO B:106
binding site for residue EDO B 409
29
AF2
SOFTWARE
THR B:28 , CYS B:31 , LYS B:32 , THR B:36 , MET B:44 , TYR B:45 , TRP B:46 , ARG B:47
binding site for residue EDO B 410
30
AF3
SOFTWARE
HIS C:32 , CYS C:36 , CYS C:40 , GLY C:73 , CYS C:74 , GLY C:77
binding site for residue SF4 C 1001
31
AF4
SOFTWARE
ASP C:170 , MGD C:1003 , MD1 C:1004 , BSY C:1009
binding site for residue MO C 1002
32
AF5
SOFTWARE
LYS C:76 , ASP C:170 , GLY C:201 , ASN C:203 , GLN C:206 , THR C:207 , ARG C:208 , ILE C:228 , SER C:229 , PRO C:230 , ASP C:231 , ASN C:233 , GLY C:248 , ASP C:250 , GLY C:421 , GLY C:422 , GLY C:423 , TRP C:427 , TYR C:457 , ILE C:458 , GLY C:459 , ASN C:761 , PRO C:763 , HIS C:764 , SER C:765 , ARG C:766 , SER C:768 , VAL C:769 , HIS C:770 , ARG C:830 , ARG C:882 , MO C:1002 , MD1 C:1004 , BSY C:1009 , HOH C:1120
binding site for residue MGD C 1003
33
AF6
SOFTWARE
LEU C:33 , ASN C:35 , TYR C:168 , ASP C:170 , HIS C:426 , TYR C:536 , ARG C:537 , GLY C:538 , ASN C:539 , GLN C:543 , ILE C:564 , ASN C:565 , ARG C:567 , ASP C:569 , SER C:581 , TRP C:584 , LYS C:587 , ASP C:615 , SER C:762 , HIS C:764 , VAL C:769 , HIS C:770 , SER C:771 , THR C:772 , HIS C:835 , GLN C:849 , GLN C:881 , ARG C:882 , MO C:1002 , MGD C:1003 , BSY C:1009 , HOH C:1138 , HOH C:1181 , HOH C:1203 , HOH C:1206
binding site for residue MD1 C 1004
34
AF7
SOFTWARE
ILE C:751 , ASP C:752 , ALA C:753 , HOH C:1115
binding site for residue EDO C 1005
35
AF8
SOFTWARE
ALA C:61 , PRO C:62 , MET C:63 , ILE C:66 , PRO C:67 , GLU C:68 , TYR C:69
binding site for residue EDO C 1006
36
AF9
SOFTWARE
GLU C:495 , ASN C:553 , HOH C:1300 , HOH C:1327 , TRP E:806 , ARG F:103
binding site for residue EDO C 1007
37
AG1
SOFTWARE
ARG C:96 , HOH C:1109
binding site for residue EDO C 1008
38
AG2
SOFTWARE
ASN C:35 , PHE C:164 , TYR C:165 , TYR C:168 , ASP C:170 , ILE C:458 , GLY C:459 , MO C:1002 , MGD C:1003 , MD1 C:1004
binding site for residue BSY C 1009
39
AG3
SOFTWARE
VAL C:51 , HIS C:81 , TYR C:85 , ZN C:1013
binding site for residue SO3 C 1010
40
AG4
SOFTWARE
VAL C:777 , HOH C:1328
binding site for residue NA C 1011
41
AG5
SOFTWARE
HIS C:128 , GLU C:559
binding site for residue NA C 1012
42
AG6
SOFTWARE
HIS C:81 , SO3 C:1010 , HOH D:527
binding site for residue ZN C 1013
43
AG7
SOFTWARE
CYS D:149 , CYS D:170 , LYS D:171 , GLY D:172 , ALA D:173 , GLN D:174 , ALA D:175 , CYS D:176 , ALA D:194
binding site for residue F3S D 401
44
AG8
SOFTWARE
CYS D:137 , ASN D:138 , CYS D:140 , CYS D:145 , CYS D:180 , TYR D:182
binding site for residue SF4 D 402
45
AG9
SOFTWARE
CYS D:21 , ILE D:22 , GLY D:23 , CYS D:24 , GLN D:25 , CYS D:27 , ARG D:47 , CYS D:216
binding site for residue SF4 D 403
46
AH1
SOFTWARE
CYS D:31 , TRP D:35 , ARG D:47 , MET D:136 , CYS D:197 , GLY D:199 , CYS D:200 , CYS D:212
binding site for residue SF4 D 404
47
AH2
SOFTWARE
GLY D:85 , ILE D:86 , PHE D:88 , PRO D:108 , THR D:109 , PRO D:110 , ARG D:111 , SER D:112
binding site for residue EDO D 405
48
AH3
SOFTWARE
HIS E:32 , CYS E:36 , ALA E:39 , CYS E:40 , GLY E:73 , CYS E:74 , GLY E:77 , HOH E:1259
binding site for residue SF4 E 1001
49
AH4
SOFTWARE
ASP E:170 , MGD E:1003 , MD1 E:1004 , BSY E:1008
binding site for residue MO E 1002
50
AH5
SOFTWARE
LYS E:76 , ASP E:170 , TRP E:200 , GLY E:201 , ASN E:203 , GLN E:206 , THR E:207 , ARG E:208 , ILE E:228 , PRO E:230 , ASP E:231 , ASN E:233 , GLY E:248 , ASP E:250 , GLY E:421 , GLY E:422 , GLY E:423 , TRP E:427 , ILE E:458 , GLY E:459 , ASN E:761 , PRO E:763 , HIS E:764 , SER E:765 , ARG E:766 , SER E:768 , VAL E:769 , HIS E:770 , ARG E:830 , ARG E:882 , MO E:1002 , MD1 E:1004 , BSY E:1008 , HOH E:1142 , HOH E:1170 , HOH E:1273
binding site for residue MGD E 1003
51
AH6
SOFTWARE
LEU E:33 , ASN E:35 , TYR E:168 , ASP E:170 , HIS E:426 , TYR E:536 , ARG E:537 , GLY E:538 , ASN E:539 , GLN E:543 , LYS E:545 , ILE E:564 , ASN E:565 , ARG E:567 , ASP E:569 , SER E:581 , TRP E:584 , LYS E:587 , ASP E:615 , SER E:762 , HIS E:764 , VAL E:769 , HIS E:770 , SER E:771 , THR E:772 , HIS E:835 , GLN E:849 , GLN E:881 , ARG E:882 , MO E:1002 , MGD E:1003 , BSY E:1008 , HOH E:1134 , HOH E:1189 , HOH E:1211 , HOH E:1225
binding site for residue MD1 E 1004
52
AH7
SOFTWARE
THR E:185 , LYS E:462 , THR E:593 , SER E:594 , HIS E:596 , ASN E:697 , TYR E:708
binding site for residue EDO E 1005
53
AH8
SOFTWARE
ARG E:107 , GLU E:611 , HOH E:1113 , HOH E:1160 , HOH E:1292
binding site for residue GOL E 1006
54
AH9
SOFTWARE
ARG E:96 , ASP E:576 , HOH E:1206
binding site for residue EDO E 1007
55
AI1
SOFTWARE
ASN E:35 , PHE E:164 , TYR E:165 , TYR E:168 , ASP E:170 , ILE E:458 , GLY E:459 , MO E:1002 , MGD E:1003 , MD1 E:1004
binding site for residue BSY E 1008
56
AI2
SOFTWARE
VAL E:51 , ZN E:1013
binding site for residue SO3 E 1009
57
AI3
SOFTWARE
VAL E:777
binding site for residue NA E 1010
58
AI4
SOFTWARE
GLY E:538 , ASP E:563 , ASN E:565 , ASP E:569
binding site for residue NA E 1011
59
AI5
SOFTWARE
HIS E:128 , GLU E:559
binding site for residue NA E 1012
60
AI6
SOFTWARE
HIS E:81 , SO3 E:1009 , HOH F:565
binding site for residue ZN E 1013
61
AI7
SOFTWARE
CYS F:149 , ASN F:151 , CYS F:170 , LYS F:171 , GLY F:172 , ALA F:173 , GLN F:174 , ALA F:175 , CYS F:176
binding site for residue F3S F 401
62
AI8
SOFTWARE
CYS F:137 , ASN F:138 , CYS F:140 , CYS F:145 , CYS F:180
binding site for residue SF4 F 402
63
AI9
SOFTWARE
CYS F:21 , ILE F:22 , CYS F:24 , GLN F:25 , CYS F:27 , ARG F:47 , CYS F:216 , GLY F:218
binding site for residue SF4 F 403
64
AJ1
SOFTWARE
CYS F:31 , TRP F:35 , ARG F:47 , CYS F:197 , GLY F:199 , CYS F:200 , CYS F:212
binding site for residue SF4 F 404
65
AJ2
SOFTWARE
GLY F:85 , ILE F:86 , PHE F:88 , THR F:109 , PRO F:110 , ARG F:111 , SER F:112
binding site for residue EDO F 405
66
AJ3
SOFTWARE
GLU F:89 , ASP F:91 , ARG F:105 , SER F:107
binding site for residue EDO F 406
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (642 KB)
Header - Asym.Unit
Biol.Unit 1 (220 KB)
Header - Biol.Unit 1
Biol.Unit 2 (216 KB)
Header - Biol.Unit 2
Biol.Unit 3 (219 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5CHC
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help