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5CH7
Asym. Unit
Info
Asym.Unit (656 KB)
Biol.Unit 1 (226 KB)
Biol.Unit 2 (219 KB)
Biol.Unit 3 (224 KB)
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Title
:
CRYSTAL STRUCTURE OF THE PERCHLORATE REDUCTASE PCRAB - PHE164 GATE SWITCH INTERMEDIATE - FROM AZOSPIRA SUILLUM PS
Authors
:
C. -L. Tsai, J. A. Tainer
Date
:
10 Jul 15 (Deposition) - 09 Mar 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Electron-Shuttling Protein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Youngblut, C. L. Tsai, I. C. Clark, H. K. Carlson, A. P. Maglaqui, P. S. Gau-Pan, S. A. Redford, A. Wong, J. A. Tainer, J. D. Coates
Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues.
J. Biol. Chem. V. 291 9190 2016
[
close entry info
]
Hetero Components
(11, 54)
Info
All Hetero Components
01a: ACETATE ION (ACTa)
02a: 1,2-ETHANEDIOL (EDOa)
02b: 1,2-ETHANEDIOL (EDOb)
02c: 1,2-ETHANEDIOL (EDOc)
02d: 1,2-ETHANEDIOL (EDOd)
02e: 1,2-ETHANEDIOL (EDOe)
02f: 1,2-ETHANEDIOL (EDOf)
02g: 1,2-ETHANEDIOL (EDOg)
02h: 1,2-ETHANEDIOL (EDOh)
02i: 1,2-ETHANEDIOL (EDOi)
02j: 1,2-ETHANEDIOL (EDOj)
02k: 1,2-ETHANEDIOL (EDOk)
02l: 1,2-ETHANEDIOL (EDOl)
02m: 1,2-ETHANEDIOL (EDOm)
02n: 1,2-ETHANEDIOL (EDOn)
02o: 1,2-ETHANEDIOL (EDOo)
02p: 1,2-ETHANEDIOL (EDOp)
03a: FE3-S4 CLUSTER (F3Sa)
03b: FE3-S4 CLUSTER (F3Sb)
03c: FE3-S4 CLUSTER (F3Sc)
04a: GLYCEROL (GOLa)
05a: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1a)
05b: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1b)
05c: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3... (MD1c)
06a: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDa)
06b: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDb)
06c: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,... (MGDc)
07a: MOLYBDENUM ATOM (MOa)
07b: MOLYBDENUM ATOM (MOb)
07c: MOLYBDENUM ATOM (MOc)
08a: SODIUM ION (NAa)
08b: SODIUM ION (NAb)
08c: SODIUM ION (NAc)
08d: SODIUM ION (NAd)
09a: IRON/SULFUR CLUSTER (SF4a)
09b: IRON/SULFUR CLUSTER (SF4b)
09c: IRON/SULFUR CLUSTER (SF4c)
09d: IRON/SULFUR CLUSTER (SF4d)
09e: IRON/SULFUR CLUSTER (SF4e)
09f: IRON/SULFUR CLUSTER (SF4f)
09g: IRON/SULFUR CLUSTER (SF4g)
09h: IRON/SULFUR CLUSTER (SF4h)
09i: IRON/SULFUR CLUSTER (SF4i)
09j: IRON/SULFUR CLUSTER (SF4j)
09k: IRON/SULFUR CLUSTER (SF4k)
09l: IRON/SULFUR CLUSTER (SF4l)
10a: SULFITE ION (SO3a)
10b: SULFITE ION (SO3b)
10c: SULFITE ION (SO3c)
10d: SULFITE ION (SO3d)
10e: SULFITE ION (SO3e)
11a: ZINC ION (ZNa)
11b: ZINC ION (ZNb)
11c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
3
F3S
3
Ligand/Ion
FE3-S4 CLUSTER
4
GOL
1
Ligand/Ion
GLYCEROL
5
MD1
3
Ligand/Ion
PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YLESTER GUANYLATE ESTER
6
MGD
3
Ligand/Ion
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
7
MO
3
Ligand/Ion
MOLYBDENUM ATOM
8
NA
4
Ligand/Ion
SODIUM ION
9
SF4
12
Ligand/Ion
IRON/SULFUR CLUSTER
10
SO3
5
Ligand/Ion
SULFITE ION
11
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(53, 53)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:32 , CYS A:36 , CYS A:40 , GLY A:73 , CYS A:74 , GLY A:77
binding site for residue SF4 A 1001
02
AC2
SOFTWARE
ASP A:170 , MGD A:1003 , MD1 A:1004
binding site for residue MO A 1002
03
AC3
SOFTWARE
LYS A:76 , ASP A:170 , TRP A:200 , GLY A:201 , ASN A:203 , GLN A:206 , THR A:207 , ARG A:208 , ILE A:228 , PRO A:230 , ASP A:231 , ASN A:233 , GLY A:248 , ASP A:250 , GLY A:421 , GLY A:422 , GLY A:423 , TRP A:427 , ILE A:458 , GLY A:459 , ASN A:761 , PRO A:763 , HIS A:764 , SER A:765 , ARG A:766 , SER A:768 , VAL A:769 , HIS A:770 , ARG A:830 , HIS A:835 , ARG A:882 , MO A:1002 , MD1 A:1004 , HOH A:1174 , HOH A:1220 , HOH A:1262 , HOH A:1271 , HOH A:1273 , HOH A:1430
binding site for residue MGD A 1003
04
AC4
SOFTWARE
LEU A:33 , ASN A:35 , TYR A:168 , ASP A:170 , HIS A:426 , ARG A:537 , GLY A:538 , ASN A:539 , GLN A:543 , ILE A:564 , ASN A:565 , ILE A:566 , ARG A:567 , ASP A:569 , SER A:581 , TRP A:584 , LYS A:587 , ASP A:615 , SER A:762 , HIS A:764 , VAL A:769 , HIS A:770 , SER A:771 , THR A:772 , GLN A:849 , GLN A:881 , ARG A:882 , MO A:1002 , MGD A:1003 , HOH A:1255 , HOH A:1277 , HOH A:1282
binding site for residue MD1 A 1004
05
AC5
SOFTWARE
TRP A:242 , ILE A:243 , HIS A:244 , VAL A:398 , THR A:399 , HOH A:1218 , HOH A:1361
binding site for residue EDO A 1005
06
AC6
SOFTWARE
LYS A:462 , THR A:593 , SER A:594 , HIS A:596 , ASN A:697 , TYR A:708 , HOH A:1116
binding site for residue EDO A 1006
07
AC7
SOFTWARE
PHE A:192 , SER A:194 , ALA A:218 , ASN A:221
binding site for residue EDO A 1007
08
AC8
SOFTWARE
HIS A:88 , VAL A:777
binding site for residue NA A 1008
09
AC9
SOFTWARE
HIS A:81 , ASP A:82 , SO3 A:1011 , LYS B:33
binding site for residue ZN A 1009
10
AD1
SOFTWARE
LYS A:58 , ASP A:59 , ILE A:60 , ALA A:61 , PRO A:62 , GLU A:68 , LYS A:690
binding site for residue GOL A 1010
11
AD2
SOFTWARE
HIS A:81 , ZN A:1009
binding site for residue SO3 A 1011
12
AD3
SOFTWARE
ILE A:237 , LYS A:238 , LEU B:18 , ASN B:19 , PRO B:261 , LEU B:263
binding site for residue EDO A 1012
13
AD4
SOFTWARE
ASN A:804 , PRO A:896 , SER A:898 , HOH A:1453 , HOH A:1519 , PRO B:110
binding site for residue SO3 A 1013
14
AD5
SOFTWARE
CYS B:149 , ASN B:151 , CYS B:170 , LYS B:171 , GLY B:172 , ALA B:173 , GLN B:174 , ALA B:175 , CYS B:176 , ALA B:194
binding site for residue F3S B 401
15
AD6
SOFTWARE
CYS B:137 , ASN B:138 , CYS B:140 , ALA B:144 , CYS B:145 , CYS B:180
binding site for residue SF4 B 402
16
AD7
SOFTWARE
CYS B:21 , ILE B:22 , CYS B:24 , GLN B:25 , CYS B:27 , ARG B:47 , CYS B:216 , GLY B:218
binding site for residue SF4 B 403
17
AD8
SOFTWARE
TYR B:14 , CYS B:31 , TRP B:35 , ARG B:47 , CYS B:197 , ILE B:198 , GLY B:199 , CYS B:200 , CYS B:212
binding site for residue SF4 B 404
18
AD9
SOFTWARE
GLY B:85 , ILE B:86 , PHE B:88 , THR B:109 , PRO B:110 , ARG B:111 , SER B:112
binding site for residue EDO B 405
19
AE1
SOFTWARE
SER B:231 , SER B:232 , ASP B:326 , HOH B:602 , HOH B:655
binding site for residue EDO B 406
20
AE2
SOFTWARE
ASP B:91 , ARG B:95 , PRO B:101 , GLY B:102 , ARG B:103 , HOH B:667
binding site for residue EDO B 407
21
AE3
SOFTWARE
HIS C:32 , CYS C:36 , ALA C:39 , CYS C:40 , GLY C:73 , CYS C:74
binding site for residue SF4 C 1001
22
AE4
SOFTWARE
ASP C:170 , MGD C:1003 , MD1 C:1004
binding site for residue MO C 1002
23
AE5
SOFTWARE
LYS C:76 , ASP C:170 , TRP C:200 , GLY C:201 , SER C:202 , ASN C:203 , GLN C:206 , THR C:207 , ILE C:228 , SER C:229 , PRO C:230 , ASP C:231 , ASN C:233 , GLY C:248 , ASP C:250 , GLY C:421 , GLY C:422 , GLY C:423 , TRP C:427 , ILE C:458 , GLY C:459 , ASN C:761 , PRO C:763 , HIS C:764 , SER C:765 , ARG C:766 , SER C:768 , VAL C:769 , HIS C:770 , ARG C:830 , HIS C:835 , ARG C:882 , MO C:1002 , MD1 C:1004 , HOH C:1134 , HOH C:1189 , HOH C:1299 , HOH C:1326 , HOH C:1329
binding site for residue MGD C 1003
24
AE6
SOFTWARE
LEU C:33 , ASN C:35 , TYR C:168 , ASP C:170 , HIS C:426 , ARG C:537 , GLY C:538 , ASN C:539 , GLN C:543 , ILE C:564 , ASN C:565 , ILE C:566 , ARG C:567 , ASP C:569 , SER C:581 , TRP C:584 , LYS C:587 , ASP C:615 , SER C:762 , HIS C:764 , VAL C:769 , HIS C:770 , SER C:771 , THR C:772 , HIS C:835 , GLN C:849 , GLN C:881 , ARG C:882 , MO C:1002 , MGD C:1003 , HOH C:1201 , HOH C:1231 , HOH C:1233
binding site for residue MD1 C 1004
25
AE7
SOFTWARE
ILE C:751 , ASP C:752 , ALA C:753 , HOH C:1114 , HOH C:1334
binding site for residue EDO C 1005
26
AE8
SOFTWARE
GLU C:495 , ASN C:553 , HOH C:1173 , HOH C:1195 , HOH C:1221 , TRP E:806 , ARG F:103
binding site for residue EDO C 1006
27
AE9
SOFTWARE
VAL C:777
binding site for residue NA C 1007
28
AF1
SOFTWARE
GLN C:246 , PRO C:247 , HOH C:1226 , HOH C:1309
binding site for residue ACT C 1008
29
AF2
SOFTWARE
ASN C:804 , PRO C:896 , PRO D:110
binding site for residue SO3 C 1009
30
AF3
SOFTWARE
HIS C:81 , ZN C:1011
binding site for residue SO3 C 1010
31
AF4
SOFTWARE
HIS C:81 , ASP C:82 , SO3 C:1010 , LYS D:33
binding site for residue ZN C 1011
32
AF5
SOFTWARE
GLU A:495 , ASN A:553 , HOH A:1292 , TRP C:806 , ARG D:103 , HOH D:522 , HOH D:539
binding site for residue EDO D 401
33
AF6
SOFTWARE
CYS D:149 , CYS D:170 , LYS D:171 , GLY D:172 , ALA D:173 , GLN D:174 , ALA D:175 , CYS D:176 , ALA D:194
binding site for residue F3S D 402
34
AF7
SOFTWARE
CYS D:137 , ASN D:138 , CYS D:140 , CYS D:145 , CYS D:180
binding site for residue SF4 D 403
35
AF8
SOFTWARE
CYS D:21 , CYS D:24 , GLN D:25 , CYS D:27 , ARG D:47 , CYS D:216 , GLY D:218
binding site for residue SF4 D 404
36
AF9
SOFTWARE
CYS D:31 , TRP D:35 , ARG D:47 , CYS D:197 , CYS D:200 , CYS D:212
binding site for residue SF4 D 405
37
AG1
SOFTWARE
ILE D:82 , GLY D:85 , ILE D:86 , PHE D:88 , THR D:109 , PRO D:110 , ARG D:111 , SER D:112
binding site for residue EDO D 406
38
AG2
SOFTWARE
HIS E:32 , CYS E:36 , ALA E:39 , CYS E:40 , HIS E:42 , GLY E:73 , CYS E:74
binding site for residue SF4 E 1001
39
AG3
SOFTWARE
ASP E:170 , MGD E:1003 , MD1 E:1004
binding site for residue MO E 1002
40
AG4
SOFTWARE
LYS E:76 , ASP E:170 , TRP E:200 , GLY E:201 , ASN E:203 , GLN E:206 , THR E:207 , ARG E:208 , ILE E:228 , SER E:229 , PRO E:230 , ASP E:231 , ASN E:233 , GLY E:248 , ASP E:250 , GLY E:421 , GLY E:422 , GLY E:423 , TRP E:427 , ILE E:458 , GLY E:459 , ASN E:761 , PRO E:763 , HIS E:764 , SER E:765 , ARG E:766 , SER E:768 , VAL E:769 , HIS E:770 , ARG E:830 , ARG E:882 , MO E:1002 , MD1 E:1004 , HOH E:1141 , HOH E:1156 , HOH E:1390 , HOH E:1392 , HOH E:1404
binding site for residue MGD E 1003
41
AG5
SOFTWARE
LEU E:33 , ASN E:35 , TYR E:168 , ASP E:170 , HIS E:426 , TYR E:536 , ARG E:537 , GLY E:538 , ASN E:539 , GLN E:543 , LYS E:545 , ILE E:564 , ASN E:565 , ILE E:566 , ARG E:567 , ASP E:569 , SER E:581 , TRP E:584 , LYS E:587 , ASP E:615 , SER E:762 , HIS E:764 , VAL E:769 , HIS E:770 , SER E:771 , THR E:772 , HIS E:835 , GLN E:849 , CYS E:852 , GLN E:881 , ARG E:882 , MO E:1002 , MGD E:1003 , HOH E:1205 , HOH E:1250 , HOH E:1385
binding site for residue MD1 E 1004
42
AG6
SOFTWARE
TRP A:806 , ARG B:103 , ARG B:105 , GLU E:495 , ASN E:553 , HOH E:1151 , HOH E:1301 , HOH E:1343
binding site for residue EDO E 1005
43
AG7
SOFTWARE
THR E:185 , LYS E:462 , THR E:593 , SER E:594 , HIS E:596 , ASN E:697 , TYR E:708
binding site for residue EDO E 1006
44
AG8
SOFTWARE
GLU E:808 , TRP E:810 , LYS E:815 , LYS E:889
binding site for residue EDO E 1007
45
AG9
SOFTWARE
HIS E:81 , ZN E:1010 , LYS F:33
binding site for residue SO3 E 1008
46
AH1
SOFTWARE
VAL E:777 , HOH E:1615
binding site for residue NA E 1009
47
AH2
SOFTWARE
HIS E:81 , ASP E:82 , SO3 E:1008 , LYS F:33
binding site for residue ZN E 1010
48
AH3
SOFTWARE
CYS F:149 , ASN F:151 , CYS F:170 , LYS F:171 , GLY F:172 , ALA F:173 , GLN F:174 , ALA F:175 , CYS F:176
binding site for residue F3S F 401
49
AH4
SOFTWARE
CYS F:137 , ASN F:138 , CYS F:140 , CYS F:145 , CYS F:180
binding site for residue SF4 F 402
50
AH5
SOFTWARE
CYS F:21 , ILE F:22 , CYS F:24 , GLN F:25 , CYS F:27 , ARG F:47 , CYS F:216
binding site for residue SF4 F 403
51
AH6
SOFTWARE
TYR F:14 , CYS F:31 , TRP F:35 , ARG F:47 , CYS F:197 , GLY F:199 , CYS F:200 , CYS F:212
binding site for residue SF4 F 404
52
AH7
SOFTWARE
GLY F:85 , ILE F:86 , PHE F:88 , PRO F:108 , THR F:109 , PRO F:110 , ARG F:111 , SER F:112
binding site for residue EDO F 405
53
AH8
SOFTWARE
PHE F:97 , HOH F:512
binding site for residue EDO F 406
[
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