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5CCV
Asym. Unit
Info
Asym.Unit (2.2 MB)
Biol.Unit 1 (296 KB)
Biol.Unit 10 (580 KB)
Biol.Unit 11 (579 KB)
Biol.Unit 12 (575 KB)
Biol.Unit 13 (588 KB)
Biol.Unit 14 (487 KB)
Biol.Unit 2 (298 KB)
Biol.Unit 3 (299 KB)
Biol.Unit 4 (294 KB)
Biol.Unit 5 (304 KB)
Biol.Unit 6 (298 KB)
Biol.Unit 7 (295 KB)
Biol.Unit 8 (206 KB)
Biol.Unit 9 (579 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FULL-LENGTH NS5 FROM DENGUE VIRUS TYPE 3
Authors
:
V. J. Klema, K. H. Choi
Date
:
02 Jul 15 (Deposition) - 03 Feb 16 (Release) - 01 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: A,F (1x)
Biol. Unit 10: A,B (1x)
Biol. Unit 11: C,D (1x)
Biol. Unit 12: D,G (1x)
Biol. Unit 13: E,F (1x)
Biol. Unit 14: G,H (1x)
Keywords
:
Methyltransferase, Nonstructural Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. J. Klema, M. Ye, A. Hindupur, T. Teramoto, K. Gottipati, R. Padmanabhan, K. H. Choi
Crystal Structure Of Full-Length Ns5 From Dengue Virus Type 3
To Be Published
[
close entry info
]
Hetero Components
(2, 24)
Info
All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
1b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
1c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
1d: S-ADENOSYL-L-HOMOCYSTEINE (SAHd)
1e: S-ADENOSYL-L-HOMOCYSTEINE (SAHe)
1f: S-ADENOSYL-L-HOMOCYSTEINE (SAHf)
1g: S-ADENOSYL-L-HOMOCYSTEINE (SAHg)
1h: S-ADENOSYL-L-HOMOCYSTEINE (SAHh)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
2p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SAH
8
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
2
ZN
16
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:712 , HIS A:714 , CYS A:728 , CYS A:847
binding site for residue ZN A 1001
02
AC2
SOFTWARE
GLU A:437 , HIS A:441 , CYS A:446 , GLY A:447 , CYS A:449
binding site for residue ZN A 1002
03
AC3
SOFTWARE
SER A:56 , GLY A:58 , GLY A:81 , CYS A:82 , GLY A:83 , ARG A:84 , GLY A:85 , GLY A:86 , TRP A:87 , THR A:104 , LYS A:105 , HIS A:110 , LYS A:130 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146
binding site for residue SAH A 1003
04
AC4
SOFTWARE
GLU B:437 , HIS B:441 , CYS B:446 , CYS B:449
binding site for residue ZN B 1001
05
AC5
SOFTWARE
HIS B:712 , HIS B:714 , CYS B:728 , CYS B:847
binding site for residue ZN B 1002
06
AC6
SOFTWARE
SER B:56 , GLY B:58 , GLY B:81 , CYS B:82 , GLY B:83 , GLY B:86 , TRP B:87 , LYS B:105 , HIS B:110 , GLU B:111 , LYS B:130 , ASP B:131 , VAL B:132 , PHE B:133 , ASP B:146
binding site for residue SAH B 1003
07
AC7
SOFTWARE
GLU C:437 , HIS C:441 , CYS C:446 , CYS C:449
binding site for residue ZN C 1001
08
AC8
SOFTWARE
HIS C:712 , HIS C:714 , CYS C:728 , CYS C:847
binding site for residue ZN C 1002
09
AC9
SOFTWARE
SER C:56 , GLY C:58 , GLY C:81 , CYS C:82 , GLY C:83 , GLY C:86 , TRP C:87 , THR C:104 , LYS C:105 , HIS C:110 , GLU C:111 , LYS C:130 , ASP C:131 , VAL C:132 , ASP C:146
binding site for residue SAH C 1003
10
AD1
SOFTWARE
GLU D:437 , HIS D:441 , CYS D:446 , GLY D:447 , CYS D:449
binding site for residue ZN D 1001
11
AD2
SOFTWARE
HIS D:712 , HIS D:714 , CYS D:728 , CYS D:847
binding site for residue ZN D 1002
12
AD3
SOFTWARE
SER D:56 , GLY D:58 , GLY D:81 , CYS D:82 , GLY D:83 , GLY D:86 , TRP D:87 , THR D:104 , LYS D:105 , HIS D:110 , GLU D:111 , LYS D:130 , ASP D:131 , VAL D:132 , PHE D:133 , ASP D:146
binding site for residue SAH D 1003
13
AD4
SOFTWARE
GLU E:437 , HIS E:441 , CYS E:446 , GLY E:447 , CYS E:449
binding site for residue ZN E 1001
14
AD5
SOFTWARE
HIS E:712 , HIS E:714 , CYS E:728 , CYS E:847
binding site for residue ZN E 1002
15
AD6
SOFTWARE
SER E:56 , GLY E:58 , GLY E:81 , CYS E:82 , GLY E:83 , GLY E:86 , TRP E:87 , LYS E:105 , HIS E:110 , LYS E:130 , ASP E:131 , VAL E:132 , PHE E:133 , ASP E:146
binding site for residue SAH E 1003
16
AD7
SOFTWARE
HIS F:712 , HIS F:714 , CYS F:728 , CYS F:847
binding site for residue ZN F 1001
17
AD8
SOFTWARE
GLU F:437 , HIS F:441 , CYS F:446 , CYS F:449
binding site for residue ZN F 1002
18
AD9
SOFTWARE
SER F:56 , GLY F:58 , GLY F:81 , CYS F:82 , GLY F:83 , GLY F:86 , TRP F:87 , THR F:104 , LYS F:105 , HIS F:110 , LYS F:130 , ASP F:131 , VAL F:132 , PHE F:133 , ASP F:146
binding site for residue SAH F 1003
19
AE1
SOFTWARE
GLU G:437 , HIS G:441 , CYS G:446 , CYS G:449
binding site for residue ZN G 1001
20
AE2
SOFTWARE
HIS G:712 , HIS G:714 , CYS G:728 , CYS G:847
binding site for residue ZN G 1002
21
AE3
SOFTWARE
SER G:56 , GLY G:58 , GLY G:81 , CYS G:82 , GLY G:83 , GLY G:85 , GLY G:86 , TRP G:87 , THR G:104 , LYS G:105 , HIS G:110 , GLU G:111 , LYS G:130 , ASP G:131 , VAL G:132 , PHE G:133 , ASP G:146 , ILE G:147
binding site for residue SAH G 1003
22
AE4
SOFTWARE
HIS H:712 , HIS H:714 , CYS H:728 , CYS H:847
binding site for residue ZN H 1001
23
AE5
SOFTWARE
GLU H:437 , HIS H:441 , CYS H:446 , CYS H:449
binding site for residue ZN H 1002
24
AE6
SOFTWARE
SER H:56 , GLY H:81 , CYS H:82 , GLY H:83 , GLY H:86 , TRP H:87 , THR H:104 , LYS H:105 , HIS H:110 , GLU H:111 , LYS H:130 , ASP H:131 , VAL H:132 , ASP H:146
binding site for residue SAH H 1003
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain C
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Chain E
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Chain H
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (2.2 MB)
Header - Asym.Unit
Biol.Unit 1 (296 KB)
Header - Biol.Unit 1
Biol.Unit 10 (580 KB)
Header - Biol.Unit 10
Biol.Unit 11 (579 KB)
Header - Biol.Unit 11
Biol.Unit 12 (575 KB)
Header - Biol.Unit 12
Biol.Unit 13 (588 KB)
Header - Biol.Unit 13
Biol.Unit 14 (487 KB)
Header - Biol.Unit 14
Biol.Unit 2 (298 KB)
Header - Biol.Unit 2
Biol.Unit 3 (299 KB)
Header - Biol.Unit 3
Biol.Unit 4 (294 KB)
Header - Biol.Unit 4
Biol.Unit 5 (304 KB)
Header - Biol.Unit 5
Biol.Unit 6 (298 KB)
Header - Biol.Unit 6
Biol.Unit 7 (295 KB)
Header - Biol.Unit 7
Biol.Unit 8 (206 KB)
Header - Biol.Unit 8
Biol.Unit 9 (579 KB)
Header - Biol.Unit 9
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