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5CCU
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDOGLYCOCERAMIDASE I FROM RHODOCOC-CUS EQUI
Authors
:
L. Chen
Date
:
02 Jul 15 (Deposition) - 02 Sep 15 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.11
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Apo, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. B. Han, L. Q. Chen, Z. Li, Y. M. Tan, Y. Feng, G. Y. Yang
Structural Insights Into The Broad Substrate Specificity Of A Novel Endoglycoceramidase I Belonging To A New Subfamily Of Gh5 Glycosidases
J. Biol. Chem. V. 292 4789 2017
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
2a: SODIUM ION (NAa)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
2
NA
1
Ligand/Ion
SODIUM ION
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:222 , PRO A:223 , GLU A:267 , PRO A:268 , VAL A:270 , TRP A:272 , ASN A:273 , PRO A:298 , HIS A:299
binding site for residue EDO A 601
02
AC2
SOFTWARE
ARG A:90 , PHE A:432 , VAL A:433 , SER A:434 , ASP A:435 , ARG A:458 , HOH A:718
binding site for residue EDO A 602
03
AC3
SOFTWARE
ILE A:41 , THR A:42 , ASP A:53 , ARG A:57 , HIS A:133 , HOH A:703
binding site for residue EDO A 603
04
AC4
SOFTWARE
THR A:39 , PRO A:40 , ILE A:41 , ALA A:129 , GLY A:131 , EDO A:606
binding site for residue EDO A 604
05
AC5
SOFTWARE
TRP A:272 , PRO A:277 , SER A:278 , ASN A:331 , ALA A:334 , ARG A:338
binding site for residue EDO A 605
06
AC6
SOFTWARE
THR A:128 , ALA A:129 , PRO A:212 , EDO A:604 , HOH A:706 , HOH A:806
binding site for residue EDO A 606
07
AC7
SOFTWARE
ALA A:443 , VAL A:444
binding site for residue EDO A 607
08
AC8
SOFTWARE
ASP A:68 , TYR A:73 , LEU A:74 , GLY A:99 , THR A:100 , SER A:101 , TYR A:116 , HOH A:702
binding site for residue EDO A 608
09
AC9
SOFTWARE
PHE A:170 , GLU A:222 , ASN A:273 , GLN A:274
binding site for residue EDO A 609
10
AD1
SOFTWARE
ARG A:228 , SER A:231 , CYS A:237 , PRO A:238 , ASP A:239 , PHE A:240 , HOH A:743
binding site for residue EDO A 610
11
AD2
SOFTWARE
GLU A:114 , ALA A:203 , ARG A:207
binding site for residue EDO A 611
12
AD3
SOFTWARE
ASP A:68 , ASP A:70 , PRO A:72
binding site for residue NA A 612
13
AD4
SOFTWARE
GLN B:108 , ARG B:109 , ARG B:228 , PHE B:240 , THR B:243
binding site for residue EDO B 601
14
AD5
SOFTWARE
ASP B:103 , SER B:144 , LYS B:145 , ASN B:150 , GLY B:151 , PHE B:152
binding site for residue EDO B 602
15
AD6
SOFTWARE
ALA B:339 , ASN B:340 , HOH B:703 , HOH B:809
binding site for residue EDO B 603
16
AD7
SOFTWARE
HIS B:50 , LEU B:51 , THR B:58 , VAL B:59 , PHE B:367 , HOH B:717 , HOH B:732
binding site for residue EDO B 604
17
AD8
SOFTWARE
PRO B:168 , GLY B:169 , PHE B:170 , PRO B:171 , LEU B:172
binding site for residue EDO B 605
18
AD9
SOFTWARE
ASP B:326 , ARG B:362 , ARG B:366
binding site for residue EDO B 606
19
AE1
SOFTWARE
PRO B:268 , ASN B:269 , THR B:271 , TRP B:272 , MET B:276 , PRO B:277 , SER B:278 , HOH B:707 , HOH B:748
binding site for residue EDO B 607
20
AE2
SOFTWARE
GLN B:245 , GLN B:249 , ALA B:288 , LEU B:289 , THR B:290 , THR B:291 , HOH B:715
binding site for residue EDO B 608
21
AE3
SOFTWARE
GLU B:114 , ALA B:115 , TYR B:116 , LEU B:117 , ARG B:119 , LEU B:120 , THR B:121 , GLY B:122 , ALA B:203 , LEU B:204 , ALA B:205 , GLU B:206 , VAL B:208 , GLU B:209 , HOH B:710
binding site for Di-peptide ASP B 118 and ARG B 207
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (153 KB)
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