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5CCJ
Asym. Unit
Info
Asym.Unit (253 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (65 KB)
Biol.Unit 5 (245 KB)
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Title
:
CRYSTAL STRUCTURE OF THE QUINTUPLE MUTANT OF THE SYNAPTOTAGMIN-1 C2B DOMAIN
Authors
:
Q. Zhou, M. Zhao, A. T. Brunger
Date
:
02 Jul 15 (Deposition) - 12 Aug 15 (Release) - 16 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (1x)
Keywords
:
Synaptotagmin1, C2B Domain, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Zhou, Y. Lai, T. Bacaj, M. Zhao, A. Y. Lyubimov, M. Uervirojnangkoorn, O. B. Zeldin, A. S. Brewster, N. K. Sauter, A. E. Cohen, S. M. Soltis, R. Alonso-Mori, M. Chollet, H. T. Lemke, R. A. Pfuetzner, U. B. Choi, W. I. Weis, J. Diao, T. C. Sudhof, A. T. Brunger
Architecture Of The Synaptotagmin-Snare Machinery For Neuronal Exocytosis.
Nature V. 525 62 2015
[
close entry info
]
Hetero Components
(2, 49)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1aa: GLYCEROL (GOLaa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
1y: GLYCEROL (GOLy)
1z: GLYCEROL (GOLz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
27
Ligand/Ion
GLYCEROL
2
SO4
22
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(49, 49)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:383 , GLY A:384 , HOH A:616 , HOH A:765 , LEU C:294 , ASN C:340 , SO4 C:507 , HOH C:729 , ALA D:395 , ASN D:396
binding site for residue GOL A 501
02
AC2
SOFTWARE
TYR A:311 , LYS A:327 , THR A:328 , ILE A:330 , SO4 A:508 , HOH A:608 , HOH A:651
binding site for residue GOL A 502
03
AC3
SOFTWARE
THR A:334 , LEU A:335 , ASN A:336 , HOH A:609 , HOH A:641 , HOH A:696 , HOH D:642 , HOH D:695
binding site for residue GOL A 503
04
AC4
SOFTWARE
VAL A:376 , PHE A:377 , SER A:382 , THR A:383 , GLU A:386 , MET A:416
binding site for residue GOL A 504
05
AC5
SOFTWARE
ARG A:322 , LYS A:325 , SO4 A:507 , HOH A:723
binding site for residue GOL A 505
06
AC6
SOFTWARE
ALA A:399 , PRO A:400 , HOH A:615 , HOH A:714 , ARG B:388 , SER B:391 , ASP B:392 , SO4 B:510 , HOH B:717 , HOH C:650
binding site for residue GOL A 506
07
AC7
SOFTWARE
LYS A:313 , HIS A:315 , ARG A:322 , LYS A:325 , GOL A:505 , HOH A:612
binding site for residue SO4 A 507
08
AC8
SOFTWARE
TYR A:311 , LYS A:313 , LYS A:325 , LYS A:327 , ASN A:370 , GOL A:502 , HOH A:607
binding site for residue SO4 A 508
09
AC9
SOFTWARE
TRP A:338 , ASN A:340 , HOH A:680 , GOL C:504 , LYS D:354 , LYS D:420
binding site for residue SO4 A 509
10
AD1
SOFTWARE
ARG A:322
binding site for residue SO4 A 510
11
AD2
SOFTWARE
LYS A:300 , HOH A:604 , ILE B:330 , TYR B:364
binding site for residue SO4 A 511
12
AD3
SOFTWARE
LYS A:369 , LYS B:326 , HOH B:623 , HOH B:646
binding site for residue GOL B 501
13
AD4
SOFTWARE
LYS B:327 , THR B:328 , ILE B:330 , SO4 B:512 , HOH B:604 , HOH B:622
binding site for residue GOL B 502
14
AD5
SOFTWARE
ASN B:340 , SER B:342 , HOH B:614 , HOH B:698 , HOH B:720 , HOH B:734 , ALA C:395 , GOL D:505
binding site for residue GOL B 503
15
AD6
SOFTWARE
LYS B:324 , LYS B:326 , SER B:344 , PHE B:345 , GLU B:346 , HOH B:719 , HOH B:737
binding site for residue GOL B 504
16
AD7
SOFTWARE
THR B:329 , ILE B:330 , HOH B:622 , HOH B:627
binding site for residue GOL B 505
17
AD8
SOFTWARE
ARG B:388 , SO4 B:513 , HOH B:611 , HOH B:631 , HOH B:652 , HOH B:727
binding site for residue GOL B 506
18
AD9
SOFTWARE
TRP B:338 , ASN B:340 , HOH B:724 , PRO C:397
binding site for residue GOL B 507
19
AE1
SOFTWARE
HOH A:603 , HOH A:624 , LYS B:313 , HIS B:315 , ARG B:322 , LYS B:325 , HOH B:742
binding site for residue SO4 B 508
20
AE2
SOFTWARE
LYS B:321 , ARG B:322 , LYS B:421 , HOH B:741
binding site for residue SO4 B 509
21
AE3
SOFTWARE
GOL A:506 , ARG B:388 , GLN B:403 , HOH B:608 , HOH B:631 , HOH B:658 , HOH B:670 , TYR C:380 , HOH C:673
binding site for residue SO4 B 510
22
AE4
SOFTWARE
THR B:334 , LEU B:335 , ASN B:336
binding site for residue SO4 B 511
23
AE5
SOFTWARE
ASP A:303 , VAL A:304 , HOH A:603 , TYR B:311 , LYS B:313 , LYS B:325 , LYS B:327 , GOL B:502 , HOH B:604
binding site for residue SO4 B 512
24
AE6
SOFTWARE
GLY B:384 , ARG B:388 , GOL B:506 , HOH B:620 , GOL D:502 , HOH D:607
binding site for residue SO4 B 513
25
AE7
SOFTWARE
GLY B:368 , LYS B:369 , HOH B:628
binding site for residue SO4 B 514
26
AE8
SOFTWARE
LYS B:331 , LYS B:332 , HOH B:627 , HOH B:630 , HOH B:707 , HOH B:728
binding site for residue SO4 B 515
27
AE9
SOFTWARE
VAL C:376 , PHE C:377 , SER C:382 , THR C:383 , GLU C:386 , HOH C:603
binding site for residue GOL C 501
28
AF1
SOFTWARE
HOH B:606 , THR C:334 , LEU C:335 , ASN C:336 , HOH C:605
binding site for residue GOL C 502
29
AF2
SOFTWARE
LYS C:331 , LYS C:332 , HOH C:602 , HOH C:634 , HOH C:639 , HOH C:642
binding site for residue GOL C 503
30
AF3
SOFTWARE
LEU A:294 , ASN A:340 , SO4 A:509 , HOH A:742 , HOH A:752 , ALA B:395 , ASN B:396 , THR C:383 , GLY C:384
binding site for residue GOL C 504
31
AF4
SOFTWARE
ARG C:322 , LEU C:323 , LYS C:324 , LYS C:325
binding site for residue GOL C 505
32
AF5
SOFTWARE
TYR C:311 , LYS C:313 , ASN C:370 , HOH C:641 , ILE D:367 , GLY D:368
binding site for residue GOL C 506
33
AF6
SOFTWARE
GOL A:501 , HOH A:778 , LYS B:354 , LYS B:420 , TRP C:338 , ASN C:340 , HOH C:606
binding site for residue SO4 C 507
34
AF7
SOFTWARE
LYS C:313 , HIS C:315
binding site for residue SO4 C 508
35
AF8
SOFTWARE
LYS C:321 , ARG C:322
binding site for residue SO4 C 509
36
AF9
SOFTWARE
LYS D:327 , THR D:328 , ILE D:330 , ASN D:370 , HOH D:715
binding site for residue GOL D 501
37
AG1
SOFTWARE
ALA A:395 , THR B:383 , GLY B:384 , SO4 B:513 , HOH B:702 , GOL D:504 , GOL D:508 , HOH D:607 , HOH D:719
binding site for residue GOL D 502
38
AG2
SOFTWARE
ALA B:286 , GLU D:412 , MET D:416 , HOH D:616 , HOH D:767
binding site for residue GOL D 503
39
AG3
SOFTWARE
ALA A:395 , HOH A:795 , VAL D:292 , ASN D:340 , SER D:342 , GOL D:502 , HOH D:669 , HOH D:676
binding site for residue GOL D 504
40
AG4
SOFTWARE
GOL B:503 , HOH B:698 , THR D:383 , HOH D:627 , HOH D:646 , HOH D:660 , HOH D:661 , HOH D:746 , HOH D:751
binding site for residue GOL D 505
41
AG5
SOFTWARE
TRP D:338 , ASN D:340
binding site for residue GOL D 506
42
AG6
SOFTWARE
TYR A:380 , ASN A:381 , SER A:382 , HOH A:737 , ASP D:392 , HOH D:636 , HOH D:683 , HOH D:690 , HOH D:699 , HOH D:783
binding site for residue GOL D 507
43
AG7
SOFTWARE
HOH A:635 , HOH A:795 , THR B:383 , GOL D:502 , HOH D:633 , HOH D:640 , HOH D:665 , HOH D:669
binding site for residue GOL D 508
44
AG8
SOFTWARE
TYR A:380 , ARG D:388 , GLN D:403 , HOH D:602 , HOH D:636 , HOH D:658 , HOH D:711 , HOH D:738
binding site for residue SO4 D 509
45
AG9
SOFTWARE
LYS D:313 , HIS D:315 , ARG D:322 , LYS D:325
binding site for residue SO4 D 510
46
AH1
SOFTWARE
TYR D:311 , LYS D:313 , LYS D:325 , LYS D:327 , ASN D:370 , HOH D:612
binding site for residue SO4 D 511
47
AH2
SOFTWARE
THR D:334 , LEU D:335 , ASN D:336
binding site for residue SO4 D 512
48
AH3
SOFTWARE
LYS D:321 , ARG D:322 , LYS D:421
binding site for residue SO4 D 513
49
AH4
SOFTWARE
GLY D:384 , ARG D:388 , HOH D:608 , HOH D:661 , HOH D:667 , HOH D:689
binding site for residue SO4 D 514
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Asym.Unit (253 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
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Biol.Unit 3 (61 KB)
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