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5CBS
Biol. Unit 2
Info
Asym.Unit (206 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN (S1S2J) IN COMPLEX WITH THE ANTAGONIST (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-3-YL) PROPANOIC ACID AT 1.8A RESOLUTION
Authors
:
K. Frydenvang, J. S. Kastrup
Date
:
01 Jul 15 (Deposition) - 30 Dec 15 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Ampa Receptor Ligand-Binding Domain, Glua2-S1S2J, Antagonist, Membrane Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Szymanska, K. Frydenvang, D. S. Pickering, C. Krintel, B. Nielsen, A. Kooshki, L. G. Zachariassen, L. Olsen, J. S. Kastrup, T. N. Johansen
Studies On Aryl-Substituted Phenylalanines: Synthesis, Activity, And Different Binding Modes At Ampa Receptors.
J. Med. Chem. V. 59 448 2016
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42a)
2b: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42b)
2c: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42c)
2d: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42d)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
E42
2
Ligand/Ion
(R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-3-YL)PROPANOIC ACID
3
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
1
Ligand/Ion
GLYCEROL
5
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(19, 19)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC9 (SOFTWARE)
03: AD1 (SOFTWARE)
04: AD2 (SOFTWARE)
05: AD3 (SOFTWARE)
06: AD4 (SOFTWARE)
07: AD5 (SOFTWARE)
08: AD6 (SOFTWARE)
09: AD7 (SOFTWARE)
10: AD8 (SOFTWARE)
11: AE7 (SOFTWARE)
12: AE8 (SOFTWARE)
13: AE9 (SOFTWARE)
14: AF1 (SOFTWARE)
15: AF2 (SOFTWARE)
16: AF3 (SOFTWARE)
17: AF4 (SOFTWARE)
18: AF5 (SOFTWARE)
19: AF6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
LYS A:113 , HOH A:410 , LYS D:79
binding site for residue EDO A 307
02
AC9
SOFTWARE
TYR B:58 , PRO B:86 , LEU B:87 , THR B:88 , ARG B:93 , ILE B:108 , SER B:139 , GLU B:190 , ASP B:213 , LYS B:215 , EDO B:304 , HOH B:422 , HOH B:557
binding site for residue E42 B 301
03
AD1
SOFTWARE
HIS B:20 , GLU B:21 , ARG B:28 , HIS B:43 , HOH B:471
binding site for residue SO4 B 302
04
AD2
SOFTWARE
ARG B:145 , TRP B:156 , ARG B:160 , LYS D:47
binding site for residue SO4 B 303
05
AD3
SOFTWARE
TYR B:58 , GLU B:190 , TYR B:217 , E42 B:301 , HOH B:443 , HOH B:573
binding site for residue EDO B 304
06
AD4
SOFTWARE
SER B:214 , HOH B:555 , PRO D:102 , SER D:105 , ASN D:239 , EDO D:307 , HOH D:425
binding site for residue EDO B 305
07
AD5
SOFTWARE
PRO B:102 , PHE B:103 , MET B:104 , SER B:105 , HOH B:412 , HOH B:535 , HOH B:580 , SER D:214 , HOH D:401
binding site for residue EDO B 306
08
AD6
SOFTWARE
SER B:137 , GLY B:138 , HOH B:437 , HOH B:477
binding site for residue EDO B 307
09
AD7
SOFTWARE
SER B:105 , SER B:191 , GLU B:195 , ASN B:211 , HOH B:519 , HOH B:609
binding site for residue EDO B 308
10
AD8
SOFTWARE
GLU B:24 , GLY B:25 , ARG B:28 , LYS B:49 , HOH B:603 , ARG D:146 , LYS D:148 , HOH D:629
binding site for residue GOL B 309
11
AE7
SOFTWARE
TYR D:58 , PRO D:86 , LEU D:87 , THR D:88 , ARG D:93 , ILE D:108 , SER D:139 , GLU D:190 , ASP D:213 , LYS D:215 , TYR D:217 , EDO D:305 , HOH D:411 , HOH D:547
binding site for residue E42 D 301
12
AE8
SOFTWARE
SER D:105 , SER D:191 , GLU D:195 , ASN D:211 , HOH D:492
binding site for residue SO4 D 302
13
AE9
SOFTWARE
HIS D:20 , GLU D:21 , ARG D:28 , HIS D:43 , HOH D:466 , HOH D:476 , HOH D:561
binding site for residue SO4 D 303
14
AF1
SOFTWARE
ARG D:145 , TRP D:156 , ARG D:160 , HOH D:552
binding site for residue SO4 D 304
15
AF2
SOFTWARE
TYR D:58 , GLU D:190 , MET D:193 , TYR D:217 , E42 D:301 , HOH D:416 , HOH D:555
binding site for residue EDO D 305
16
AF3
SOFTWARE
SER D:137 , GLY D:138 , HOH D:464 , HOH D:572
binding site for residue EDO D 306
17
AF4
SOFTWARE
EDO B:305 , MET D:104 , SER D:105 , ASP D:245 , HOH D:402 , HOH D:407 , HOH D:425
binding site for residue EDO D 307
18
AF5
SOFTWARE
MET D:15 , MET D:16 , HOH D:405 , HOH D:460
binding site for residue EDO D 308
19
AF6
SOFTWARE
ASN D:249 , ASP D:254 , HOH D:414 , HOH D:627
binding site for residue EDO D 309
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (206 KB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 2 (103 KB)
Header - Biol.Unit 2
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