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5CBS
Asym. Unit
Info
Asym.Unit (206 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN (S1S2J) IN COMPLEX WITH THE ANTAGONIST (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-3-YL) PROPANOIC ACID AT 1.8A RESOLUTION
Authors
:
K. Frydenvang, J. S. Kastrup
Date
:
01 Jul 15 (Deposition) - 30 Dec 15 (Release) - 27 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Ampa Receptor Ligand-Binding Domain, Glua2-S1S2J, Antagonist, Membrane Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Szymanska, K. Frydenvang, D. S. Pickering, C. Krintel, B. Nielsen, A. Kooshki, L. G. Zachariassen, L. Olsen, J. S. Kastrup, T. N. Johansen
Studies On Aryl-Substituted Phenylalanines: Synthesis, Activity, And Different Binding Modes At Ampa Receptors.
J. Med. Chem. V. 59 448 2016
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Hetero Components
(5, 33)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42a)
2b: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42b)
2c: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42c)
2d: (R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-... (E42d)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
E42
4
Ligand/Ion
(R)-2-AMINO-3-(3'-HYDROXYBIPHENYL-3-YL)PROPANOIC ACID
3
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
4
Ligand/Ion
GLYCEROL
5
SO4
10
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:58 , PRO A:86 , LEU A:87 , THR A:88 , ARG A:93 , ILE A:108 , SER A:139 , GLU A:190 , ASP A:213 , LYS A:215 , TYR A:217 , EDO A:304 , HOH A:450 , HOH A:541
binding site for residue E42 A 301
02
AC2
SOFTWARE
LYS A:47 , ARG A:145 , TRP A:156 , ARG A:160
binding site for residue SO4 A 302
03
AC3
SOFTWARE
MET A:16 , HIS A:20 , GLU A:21 , ARG A:28 , HOH A:425 , HOH A:474 , HOH A:624 , HIS C:43
binding site for residue SO4 A 303
04
AC4
SOFTWARE
TYR A:58 , GLU A:190 , TYR A:217 , E42 A:301 , HOH A:429 , HOH A:445 , HOH A:475
binding site for residue EDO A 304
05
AC5
SOFTWARE
PRO A:102 , PHE A:103 , MET A:104 , SER A:105 , ASN A:239 , HOH A:412 , HOH A:629 , SER C:214
binding site for residue EDO A 305
06
AC6
SOFTWARE
SER A:137 , GLY A:138 , HOH A:437 , HOH A:519
binding site for residue EDO A 306
07
AC7
SOFTWARE
LYS A:113 , HOH A:410 , LYS D:79
binding site for residue EDO A 307
08
AC8
SOFTWARE
GLU A:24 , GLY A:25 , ARG A:28 , LYS A:49 , HOH A:604 , HOH A:615 , GLN C:241
binding site for residue GOL A 308
09
AC9
SOFTWARE
TYR B:58 , PRO B:86 , LEU B:87 , THR B:88 , ARG B:93 , ILE B:108 , SER B:139 , GLU B:190 , ASP B:213 , LYS B:215 , EDO B:304 , HOH B:422 , HOH B:557
binding site for residue E42 B 301
10
AD1
SOFTWARE
HIS B:20 , GLU B:21 , ARG B:28 , HIS B:43 , HOH B:471
binding site for residue SO4 B 302
11
AD2
SOFTWARE
ARG B:145 , TRP B:156 , ARG B:160 , LYS D:47
binding site for residue SO4 B 303
12
AD3
SOFTWARE
TYR B:58 , GLU B:190 , TYR B:217 , E42 B:301 , HOH B:443 , HOH B:573
binding site for residue EDO B 304
13
AD4
SOFTWARE
SER B:214 , HOH B:555 , PRO D:102 , SER D:105 , ASN D:239 , EDO D:307 , HOH D:425
binding site for residue EDO B 305
14
AD5
SOFTWARE
PRO B:102 , PHE B:103 , MET B:104 , SER B:105 , HOH B:412 , HOH B:535 , HOH B:580 , SER D:214 , HOH D:401
binding site for residue EDO B 306
15
AD6
SOFTWARE
SER B:137 , GLY B:138 , HOH B:437 , HOH B:477
binding site for residue EDO B 307
16
AD7
SOFTWARE
SER B:105 , SER B:191 , GLU B:195 , ASN B:211 , HOH B:519 , HOH B:609
binding site for residue EDO B 308
17
AD8
SOFTWARE
GLU B:24 , GLY B:25 , ARG B:28 , LYS B:49 , HOH B:603 , ARG D:146 , LYS D:148 , HOH D:629
binding site for residue GOL B 309
18
AD9
SOFTWARE
TYR C:58 , PRO C:86 , LEU C:87 , THR C:88 , ARG C:93 , LEU C:106 , ILE C:108 , SER C:139 , GLU C:190 , ASP C:213 , TYR C:217 , HOH C:424 , HOH C:443
binding site for residue E42 C 301
19
AE1
SOFTWARE
HIS A:43 , HIS C:20 , GLU C:21 , ARG C:28 , GOL C:305 , HOH C:434
binding site for residue SO4 C 302
20
AE2
SOFTWARE
SER C:105 , SER C:191 , GLU C:195 , ASN C:211 , LYS C:248 , HOH C:478 , HOH C:629
binding site for residue SO4 C 303
21
AE3
SOFTWARE
ARG C:145 , TRP C:156 , ARG C:160
binding site for residue SO4 C 304
22
AE4
SOFTWARE
HIS A:43 , LYS A:237 , GLN A:241 , LEU C:23 , ARG C:28 , SO4 C:302 , HOH C:434 , HOH C:594
binding site for residue GOL C 305
23
AE5
SOFTWARE
LYS C:17 , ASN C:26 , GLU C:27 , TYR C:29 , GLU C:30 , VAL C:34 , HOH C:429 , HOH C:439 , HOH C:445
binding site for residue GOL C 306
24
AE6
SOFTWARE
SER C:137 , GLY C:138 , HOH C:627
binding site for residue CL C 307
25
AE7
SOFTWARE
TYR D:58 , PRO D:86 , LEU D:87 , THR D:88 , ARG D:93 , ILE D:108 , SER D:139 , GLU D:190 , ASP D:213 , LYS D:215 , TYR D:217 , EDO D:305 , HOH D:411 , HOH D:547
binding site for residue E42 D 301
26
AE8
SOFTWARE
SER D:105 , SER D:191 , GLU D:195 , ASN D:211 , HOH D:492
binding site for residue SO4 D 302
27
AE9
SOFTWARE
HIS D:20 , GLU D:21 , ARG D:28 , HIS D:43 , HOH D:466 , HOH D:476 , HOH D:561
binding site for residue SO4 D 303
28
AF1
SOFTWARE
ARG D:145 , TRP D:156 , ARG D:160 , HOH D:552
binding site for residue SO4 D 304
29
AF2
SOFTWARE
TYR D:58 , GLU D:190 , MET D:193 , TYR D:217 , E42 D:301 , HOH D:416 , HOH D:555
binding site for residue EDO D 305
30
AF3
SOFTWARE
SER D:137 , GLY D:138 , HOH D:464 , HOH D:572
binding site for residue EDO D 306
31
AF4
SOFTWARE
EDO B:305 , MET D:104 , SER D:105 , ASP D:245 , HOH D:402 , HOH D:407 , HOH D:425
binding site for residue EDO D 307
32
AF5
SOFTWARE
MET D:15 , MET D:16 , HOH D:405 , HOH D:460
binding site for residue EDO D 308
33
AF6
SOFTWARE
ASN D:249 , ASP D:254 , HOH D:414 , HOH D:627
binding site for residue EDO D 309
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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