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5CA3
Biol. Unit 1
Info
Asym.Unit (276 KB)
Biol.Unit 1 (138 KB)
Biol.Unit 2 (138 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLYCOSYNTHASE MUTANT D324N OF ESCHERICHIA COLI GH63 GLYCOSIDASE IN COMPLEX WITH GLUCOSE AND LACTOSE
Authors
:
T. Miyazaki, T. Tonozuka
Date
:
29 Jun 15 (Deposition) - 10 Aug 16 (Release) - 12 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoside Hydrolase, Gh63, Alpha/Alpha Barrel, Hydrolase
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Reference
:
T. Miyazaki, A. Nishikawa, T. Tonozuka
Crystal Structure Of The Enzyme-Product Complex Reveals Sugar Ring Distortion During Catalysis By Family 63 Inverting Alpha-Glycosidase.
J. Struct. Biol. 2016
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ALPHA-D-GLUCOSE (GLCa)
4a: ALPHA-LACTOSE (LBTa)
4b: ALPHA-LACTOSE (LBTb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
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No.
Name
Count
Type
Full Name
1
BGC
-1
Ligand/Ion
BETA-D-GLUCOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GLC
-1
Ligand/Ion
ALPHA-D-GLUCOSE
4
LBT
1
Ligand/Ion
ALPHA-LACTOSE
5
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(5, 5)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC8 (SOFTWARE)
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Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:431 , ASN A:433 , ASN A:435 , VAL A:437 , GLU A:439 , GLU A:549
binding site for residue CA A 1001
2
AC2
SOFTWARE
ASP A:274 , HOH A:1218 , HOH A:1553
binding site for residue MG A 1002
3
AC3
SOFTWARE
HOH A:1270 , HOH A:1277 , HOH A:1341 , HOH A:1599 , HOH A:1676 , HOH B:1189
binding site for residue MG A 1003
4
AC4
SOFTWARE
TRP A:314 , TRP A:321 , ASP A:368 , ASN A:386 , LYS A:391 , ASP A:501 , HOH A:1125 , HOH A:1153 , HOH A:1235 , HOH A:1451 , ASP B:463 , LYS B:464
binding site for residue LBT A 1004
5
AC8
SOFTWARE
ASP A:463 , LYS A:464 , TRP B:314 , TRP B:321 , ASP B:368 , ASN B:384 , ASN B:386 , LYS B:391 , TRP B:496 , ASP B:501 , BGC B:1003 , HOH B:1116 , HOH B:1139 , HOH B:1164 , HOH B:1273 , HOH B:1292 , HOH B:1449
binding site for residue LBT B 1004
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Chain A
Asymmetric Unit 1
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Asym.Unit (276 KB)
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Biol.Unit 1 (138 KB)
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