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5C9V
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
STRUCTURE OF HUMAN PARKIN G319A
Authors
:
T. Wauer, D. Komander
Date
:
29 Jun 15 (Deposition) - 22 Jul 15 (Release) - 26 Aug 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Parkin, Ubiquitin, E3 Ligase, Rbr, Parkinson'S Disease, Mitophagy, Cell Signalling, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Wauer, M. Simicek, A. Schubert, D. Komander
Mechanism Of Phospho-Ubiquitin-Induced Parkin Activation.
Nature V. 524 370 2015
(for further references see the
PDB file header
)
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
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No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
SO4
6
Ligand/Ion
SULFATE ION
3
ZN
8
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:150 , CYS A:154 , CYS A:212 , HIS A:215
binding site for residue ZN A 501
02
AC2
SOFTWARE
CYS A:253 , HIS A:257 , CYS A:289 , CYS A:293
binding site for residue ZN A 502
03
AC3
SOFTWARE
CYS A:446 , CYS A:449 , CYS A:457 , HIS A:461
binding site for residue ZN A 503
04
AC4
SOFTWARE
CYS A:166 , CYS A:169 , CYS A:196 , CYS A:201
binding site for residue ZN A 504
05
AC5
SOFTWARE
CYS A:238 , CYS A:241 , CYS A:260 , CYS A:263
binding site for residue ZN A 505
06
AC6
SOFTWARE
CYS A:332 , CYS A:337 , CYS A:352 , CYS A:360
binding site for residue ZN A 506
07
AC7
SOFTWARE
CYS A:365 , CYS A:368 , HIS A:373 , CYS A:377
binding site for residue ZN A 507
08
AC8
SOFTWARE
CYS A:418 , CYS A:421 , CYS A:436 , CYS A:441
binding site for residue ZN A 508
09
AC9
SOFTWARE
ARG A:163 , LYS A:211 , THR A:217 , ARG A:420 , HOH A:624
binding site for residue SO4 A 509
10
AD1
SOFTWARE
ASN A:454 , ARG A:455
binding site for residue SO4 A 510
11
AD2
SOFTWARE
HIS A:279 , ARG A:334 , GLY A:361
binding site for residue SO4 A 511
12
AD3
SOFTWARE
ASN A:254 , PRO A:294
binding site for residue SO4 A 512
13
AD4
SOFTWARE
LYS A:151 , HIS A:302 , ARG A:305 , TYR A:312 , HOH A:603
binding site for residue SO4 A 513
14
AD5
SOFTWARE
ARG A:348 , TYR A:372
binding site for residue SO4 A 514
15
AD6
SOFTWARE
CYS A:368 , HIS A:373 , GLU A:376 , CYS A:377 , SER A:378
binding site for residue GOL A 515
16
AD7
SOFTWARE
VAL A:186 , LEU A:187 , PRO A:189 , PHE A:208 , HOH A:604 , HOH A:621
binding site for residue GOL A 516
17
AD8
SOFTWARE
ASN A:295 , SER A:296 , LEU A:297
binding site for residue GOL A 517
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (109 KB)
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