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5C55
Biol. Unit 1
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Asym.Unit (106 KB)
Biol.Unit 1 (200 KB)
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Title
:
CRYSTAL STRUCTURE OF THE Y138F MUTANT OF C.GLUTAMICUM N-ACETYLNEURAMINIC ACID LYASE IN COMPLEX WITH PYRUVATE
Authors
:
Y. Shen, J. Zhou, J. Xie
Date
:
19 Jun 15 (Deposition) - 22 Jun 16 (Release) - 22 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Complex, Aldolase Type Tim Barrel, Schiff Base Intermediate, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Shen, J. Zhou, J. Xie
Crystal Structure Of The Y138F Mutant Of C. Glutamicum N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
To Be Published
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Hetero Components
(4, 34)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: GLYCEROL (GOLa)
4a: PYRUVIC ACID (PYRa)
4b: PYRUVIC ACID (PYRb)
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No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
2
Ligand/Ion
GLYCEROL
4
PYR
4
Ligand/Ion
PYRUVIC ACID
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:12 , GLY A:47 , SER A:48 , SER A:49 , LYS A:166 , SER A:168 , VAL A:213 , HOH A:559 , HOH A:638
binding site for residue PYR A 401
02
AC2
SOFTWARE
EDO A:403 , EDO A:405
binding site for residue EDO A 402
03
AC3
SOFTWARE
PRO A:150 , EDO A:402
binding site for residue EDO A 403
04
AC4
SOFTWARE
ASP A:41
binding site for residue EDO A 404
05
AC5
SOFTWARE
EDO A:402
binding site for residue EDO A 405
06
AC6
SOFTWARE
LYS A:30 , ILE A:280 , ILE A:281 , GLU A:282
binding site for residue EDO A 406
07
AC7
SOFTWARE
LYS A:125
binding site for residue EDO A 407
08
AC8
SOFTWARE
THR A:199 , HOH A:609
binding site for residue ACT A 408
09
AC9
SOFTWARE
LYS A:158 , HIS A:277
binding site for residue ACT A 409
10
AD1
SOFTWARE
ARG A:113 , HOH A:501 , VAL B:253 , GLY B:263 , GOL B:403
binding site for residue EDO A 410
11
AD2
SOFTWARE
VAL A:253 , ARG B:113
binding site for residue EDO B 401
12
AD3
SOFTWARE
ARG A:113 , EDO A:410 , SER B:49 , GLU B:198 , PYR B:402
binding site for residue GOL B 403
13
AD4
SOFTWARE
GLY B:8 , TYR B:205 , ASP B:210 , LEU B:232 , HOH B:525
binding site for residue EDO B 405
14
AD5
SOFTWARE
LYS B:158
binding site for residue EDO B 406
15
AD6
SOFTWARE
TYR B:205 , HOH B:646
binding site for residue ACT B 407
16
AD7
SOFTWARE
PRO B:12 , PHE B:44 , SER B:48 , SER B:49 , VAL B:105 , PHE B:136 , ALA B:137 , PHE B:138 , ASN B:139 , THR B:165 , ASP B:167 , SER B:168 , LEU B:194 , VAL B:213 , GOL B:403 , HOH B:591
binding site for Di-peptide PYR B 402 and LYS B 166
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Pfam Domains
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Asym.Unit (106 KB)
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