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5C41
Biol. Unit 1
Info
Asym.Unit (426 KB)
Biol.Unit 1 (211 KB)
Biol.Unit 2 (209 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RIBOKINASE IN COMPLEX WITH AMPPCP IN P21 SPACEGROUP AND WITH 4 PROTOMERS
Authors
:
J. Park, J. Chakrabarti, B. Singh, R. S. Gupta, M. S. Junop
Date
:
17 Jun 15 (Deposition) - 15 Jun 16 (Release) - 26 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
J. Park, J. Chakrabarti, B. Singh, R. S. Gupta, M. S. Junop
Crystal Structure Of Human Ribokinase In Complex With Amppc In P21 Spacegroup And With 4 Protomers
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
1c: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPc)
1d: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPd)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
3a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
ACP
2
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
NA
-1
Ligand/Ion
SODIUM ION
3
PO4
-1
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:199 , THR A:235 , LEU A:236 , GLY A:237 , ALA A:238 , GLY A:240 , VAL A:259 , THR A:264 , ALA A:267 , GLY A:268 , ASN A:295 , ALA A:298 , ALA A:299 , NA A:403 , HOH A:501 , HOH A:507 , HOH A:515 , HOH A:525 , HOH A:530 , HOH A:560 , HOH A:576 , HOH A:596 , HOH A:615 , HOH A:621 , HOH A:684 , HOH A:686 , HOH A:688
binding site for residue ACP A 401
2
AC2
SOFTWARE
ASP A:263 , SER A:301 , ALA A:304 , SER A:310 , HOH A:579 , HOH A:629
binding site for residue NA A 402
3
AC3
SOFTWARE
ACP A:401 , HOH A:501 , HOH A:513 , HOH A:530 , HOH A:569 , HOH A:615 , HOH A:655
binding site for residue NA A 403
4
AC4
SOFTWARE
ASN B:199 , THR B:235 , GLY B:237 , ALA B:238 , GLY B:240 , THR B:256 , GLU B:257 , VAL B:259 , THR B:264 , THR B:265 , GLY B:266 , ALA B:267 , GLY B:268 , ASN B:295 , ALA B:298 , ALA B:299 , HOH B:510 , HOH B:542 , HOH B:543 , HOH B:548 , HOH B:572 , HOH B:573 , HOH B:577 , HOH B:637 , HOH B:644 , HOH B:659 , HOH B:663 , HOH B:671
binding site for residue ACP B 401
5
AC5
SOFTWARE
ASP B:263 , SER B:301 , ALA B:304 , GLY B:306 , SER B:310 , HOH B:624
binding site for residue NA B 402
6
AC6
SOFTWARE
HOH B:523 , HOH B:536 , HOH B:542 , HOH B:612 , HOH B:641 , HOH B:663
binding site for residue NA B 403
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Asymmetric Unit 1
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Asym.Unit (426 KB)
Header - Asym.Unit
Biol.Unit 1 (211 KB)
Header - Biol.Unit 1
Biol.Unit 2 (209 KB)
Header - Biol.Unit 2
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