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5C1Z
Asym. Unit
Info
Asym.Unit (283 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (141 KB)
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(1)
Title
:
PARKIN (UBLR0RBR)
Authors
:
A. Kumar, J. D. Aguirre, T. E. C. Condos, R. J. Martinez-Torres, V. K. Cha R. Toth, R. Sundaramoorthy, P. Mercier, A. Knebel, D. E. Spratt, K. R. B G. S. Shaw, H. Walden
Date
:
15 Jun 15 (Deposition) - 29 Jul 15 (Release) - 28 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kumar, J. D. Aguirre, T. E. Condos, R. J. Martinez-Torres, V. K. Chaugule, R. Toth, R. Sundaramoorthy, P. Mercier, A. Knebel, D. E. Spratt, K. R. Barber, G. S. Shaw, H. Walden
Disruption Of The Autoinhibited State Primes The E3 Ligase Parkin For Activation And Catalysis.
Embo J. V. 34 2506 2015
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
4m: ZINC ION (ZNm)
4n: ZINC ION (ZNn)
4o: ZINC ION (ZNo)
4p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
GOL
4
Ligand/Ion
GLYCEROL
3
SO4
2
Ligand/Ion
SULFATE ION
4
ZN
16
Ligand/Ion
ZINC ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:150 , CYS A:154 , CYS A:212 , HIS A:215
binding site for residue ZN A 501
02
AC2
SOFTWARE
CYS A:166 , CYS A:169 , CYS A:196 , CYS A:201
binding site for residue ZN A 502
03
AC3
SOFTWARE
CYS A:238 , CYS A:241 , CYS A:260 , CYS A:263
binding site for residue ZN A 503
04
AC4
SOFTWARE
CYS A:253 , HIS A:257 , CYS A:289 , CYS A:293
binding site for residue ZN A 504
05
AC5
SOFTWARE
CYS A:332 , CYS A:337 , CYS A:352 , GLY A:361
binding site for residue ZN A 505
06
AC6
SOFTWARE
CYS A:365 , CYS A:368 , HIS A:373 , CYS A:377
binding site for residue ZN A 506
07
AC7
SOFTWARE
CYS A:418 , CYS A:421 , CYS A:436 , CYS A:441
binding site for residue ZN A 507
08
AC8
SOFTWARE
CYS A:446 , CYS A:449 , CYS A:457 , HIS A:461
binding site for residue ZN A 508
09
AC9
SOFTWARE
GLN A:57 , ASN A:58 , LYS A:161 , ARG A:163 , LYS A:211 , THR A:217 , ARG A:455 , HOH A:657 , HOH A:673 , HOH A:705 , HOH A:776
binding site for residue SO4 A 509
10
AD1
SOFTWARE
VAL A:186 , LEU A:187 , PRO A:189 , GLU A:207 , PHE A:208 , HOH A:610 , HOH A:634
binding site for residue GOL A 510
11
AD2
SOFTWARE
HIS A:227 , ALA A:230 , GLN A:252 , HOH A:621 , HOH A:622 , HOH A:659
binding site for residue GOL A 511
12
AD3
SOFTWARE
TYR A:147 , TRP A:183 , LEU A:226 , ILE A:229
binding site for residue CL A 512
13
AD4
SOFTWARE
CYS B:150 , CYS B:154 , CYS B:212 , HIS B:215
binding site for residue ZN B 501
14
AD5
SOFTWARE
CYS B:166 , CYS B:169 , CYS B:196 , CYS B:201
binding site for residue ZN B 502
15
AD6
SOFTWARE
CYS B:238 , CYS B:241 , CYS B:260 , CYS B:263
binding site for residue ZN B 503
16
AD7
SOFTWARE
CYS B:253 , HIS B:257 , CYS B:289 , CYS B:293
binding site for residue ZN B 504
17
AD8
SOFTWARE
CYS B:332 , CYS B:337 , CYS B:352 , GLY B:361
binding site for residue ZN B 505
18
AD9
SOFTWARE
CYS B:365 , CYS B:368 , HIS B:373 , CYS B:377
binding site for residue ZN B 506
19
AE1
SOFTWARE
CYS B:418 , CYS B:421 , CYS B:436 , CYS B:441
binding site for residue ZN B 507
20
AE2
SOFTWARE
CYS B:446 , CYS B:449 , CYS B:457 , HIS B:461
binding site for residue ZN B 508
21
AE3
SOFTWARE
GLN B:57 , ASN B:58 , LYS B:161 , ARG B:163 , LYS B:211 , THR B:217 , ARG B:455 , HOH B:675 , HOH B:686 , HOH B:692 , HOH B:697
binding site for residue SO4 B 509
22
AE4
SOFTWARE
HIS B:227 , ALA B:230 , VAL B:250 , GLN B:252 , HOH B:620 , HOH B:621 , HOH B:650
binding site for residue GOL B 510
23
AE5
SOFTWARE
VAL B:186 , LEU B:187 , PRO B:189 , GLU B:207 , PHE B:208 , HOH B:608 , HOH B:638
binding site for residue GOL B 511
24
AE6
SOFTWARE
TYR B:147 , TRP B:183 , LEU B:226 , ILE B:229
binding site for residue CL B 512
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (283 KB)
Header - Asym.Unit
Biol.Unit 1 (140 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
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