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5C0C
Asym. Unit
Info
Asym.Unit (596 KB)
Biol.Unit 1 (296 KB)
Biol.Unit 2 (296 KB)
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(1)
Title
:
1E6 TCR IN COMPLEX WITH HLA-A02 CARRYING RQFGPDWIVA
Authors
:
P. J. Rizkallah, A. M. Bulek, D. K. Cole, A. K. Sewell
Date
:
12 Jun 15 (Deposition) - 04 May 16 (Release) - 08 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,I,J (1x)
Biol. Unit 2: D,E,F,G,H (1x)
Keywords
:
Immuno, Hla-A02, 1E6-Tcr, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. K. Cole, A. M. Bulek, G. Dolton, A. J. Schauenberg, B. Szomolay, W. Rittase, A. Trimby, P. Jothikumar, A. Fuller, A. Skowera, J. Rossjohn, C. Zhu, J. J. Miles, M. Peakman, L. Wooldridge, P. J. Rizkallah, A. K. Sewell
Hotspot Autoimmune T Cell Receptor Binding Underlies Pathogen And Insulin Peptide Cross-Reactivity.
J. Clin. Invest. V. 126 2191 2016
[
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Hetero Components
(4, 42)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: TETRAETHYLENE GLYCOL (PG4a)
3b: TETRAETHYLENE GLYCOL (PG4b)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
33
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
3
Ligand/Ion
GLYCEROL
3
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:36 , ASP A:37 , ALA A:40 , SER A:42 , GLN A:43 , ARG A:44 , HOH A:413
binding site for residue EDO A 301
02
AC2
SOFTWARE
PRO A:20 , HOH A:432
binding site for residue EDO A 302
03
AC3
SOFTWARE
ARG A:44 , ASP A:61 , THR A:64 , ARG A:65 , LYS A:68 , EDO J:303 , HOH J:416
binding site for residue EDO A 303
04
AC4
SOFTWARE
ASP A:122 , TYR A:123 , THR A:134 , ALA A:136 , HOH A:448
binding site for residue PG4 A 304
05
AC5
SOFTWARE
ARG A:17 , GLY A:18 , HOH A:428 , ARG E:22 , PHE E:74
binding site for residue SO4 A 305
06
AC6
SOFTWARE
ARG A:234 , GLN A:242 , TYR B:10 , SER B:11 , HIS B:13 , PRO B:14 , HOH B:413
binding site for residue EDO B 301
07
AC7
SOFTWARE
VAL A:12 , ASP B:34 , GOL B:303 , HOH B:424
binding site for residue EDO B 302
08
AC8
SOFTWARE
ILE A:23 , SER B:33 , ASP B:34 , ILE B:35 , EDO B:302 , HOH B:427
binding site for residue GOL B 303
09
AC9
SOFTWARE
GLY D:59 , ARG D:60 , ARG D:77 , ASP D:78
binding site for residue EDO D 301
10
AD1
SOFTWARE
ASP D:112 , ILE D:113 , ASP D:140 , SER D:141 , GLN D:142 , HOH D:416
binding site for residue EDO D 302
11
AD2
SOFTWARE
GLY D:59 , ARG D:60 , PHE D:61
binding site for residue EDO D 303
12
AD3
SOFTWARE
ARG D:92 , TYR D:97 , LEU D:99 , LEU E:100 , ASN E:103
binding site for residue EDO E 301
13
AD4
SOFTWARE
ASP E:30 , TYR E:31 , LEU E:96 , TRP E:97 , GLU E:98 , ILE H:8 , VAL H:9 , HOH H:104
binding site for residue EDO E 302
14
AD5
SOFTWARE
GLN E:235 , VAL E:237 , HOH E:424
binding site for residue EDO E 303
15
AD6
SOFTWARE
PRO E:8 , ARG E:9 , HOH E:405
binding site for residue EDO E 304
16
AD7
SOFTWARE
LEU E:116 , GLU E:117 , ASP E:118 , ASN E:121 , TYR E:153 , ASP E:187
binding site for residue EDO E 305
17
AD8
SOFTWARE
HIS E:29 , HOH E:403
binding site for residue EDO E 306
18
AD9
SOFTWARE
ARG F:44 , ASP F:61 , THR F:64 , LYS F:68 , HOH F:428 , HOH F:430
binding site for residue EDO F 301
19
AE1
SOFTWARE
ASP F:122 , ILE F:124 , ALA F:125 , THR F:134 , ALA F:136 , HOH F:461
binding site for residue EDO F 302
20
AE2
SOFTWARE
ARG F:21
binding site for residue EDO F 303
21
AE3
SOFTWARE
TYR F:85 , TYR F:118 , LYS F:121 , ASP F:122 , HOH F:424
binding site for residue EDO F 304
22
AE4
SOFTWARE
TYR F:84 , ALA F:139 , THR F:142
binding site for residue EDO F 305
23
AE5
SOFTWARE
GLU F:19 , PRO F:20 , SER F:71 , GLN F:72 , ARG F:75 , HOH F:447
binding site for residue EDO F 306
24
AE6
SOFTWARE
ARG F:44 , MET F:45 , TRP F:60 , MET F:138 , GLN F:141
binding site for residue EDO F 307
25
AE7
SOFTWARE
PRO F:50 , GLU F:53 , GLN F:54 , LYS F:127 , SER F:132 , TRP F:133
binding site for residue GOL F 308
26
AE8
SOFTWARE
SER F:4 , ARG F:6 , PHE F:8 , TYR F:27 , ASP F:29 , HOH F:496
binding site for residue GOL F 309
27
AE9
SOFTWARE
LEU F:206 , ARG F:234 , GLN F:242 , TYR G:10 , SER G:11 , HIS G:13 , PRO G:14 , HOH G:217
binding site for residue EDO G 101
28
AF1
SOFTWARE
HOH F:510 , SER G:33 , ASP G:34
binding site for residue EDO G 102
29
AF2
SOFTWARE
ASP D:66 , TYR D:71 , LEU I:11 , SER I:12
binding site for residue EDO I 301
30
AF3
SOFTWARE
ARG D:77 , ARG I:77 , HOH I:422 , HOH I:444
binding site for residue EDO I 302
31
AF4
SOFTWARE
GLU I:3 , GLU I:5 , THR I:24 , TYR I:25 , SER I:26
binding site for residue EDO I 303
32
AF5
SOFTWARE
PRO D:10 , SER D:12 , VAL D:13 , ILE D:18 , VAL D:19 , SER D:20 , GLN I:64 , ASP I:66 , SER I:69 , TYR I:71 , HOH I:429 , HOH I:432
binding site for residue PG4 I 304
33
AF6
SOFTWARE
ARG I:92 , TYR I:97 , LEU I:99 , LEU J:100 , ASN J:103
binding site for residue EDO J 301
34
AF7
SOFTWARE
LEU J:116 , GLU J:117 , ASP J:118 , ASN J:121 , TYR J:153 , ASP J:187
binding site for residue EDO J 302
35
AF8
SOFTWARE
EDO A:303 , PRO J:54 , ILE J:55 , ASP J:56 , ASP J:57
binding site for residue EDO J 303
36
AF9
SOFTWARE
GLY J:3 , VAL J:4 , PHE J:107
binding site for residue EDO J 304
37
AG1
SOFTWARE
VAL J:168 , HIS J:169 , SER J:170
binding site for residue EDO J 305
38
AG2
SOFTWARE
ARG J:85 , LYS J:102
binding site for residue EDO J 306
39
AG3
SOFTWARE
ILE C:8 , VAL C:9 , HOH C:105 , ASP J:30 , TYR J:31 , LEU J:96 , TRP J:97 , GLU J:98
binding site for residue EDO J 307
40
AG4
SOFTWARE
ARG F:17 , GLY F:18 , ARG J:22 , PHE J:74 , HOH J:486
binding site for residue SO4 J 308
41
AG5
SOFTWARE
HIS A:151 , GLN A:155 , HOH A:435 , ALA J:101 , LYS J:102
binding site for residue SO4 J 309
42
AG6
SOFTWARE
ARG G:45 , GLU G:47 , HOH G:205 , GLU J:221 , LYS J:231 , HOH J:454
binding site for residue SO4 J 310
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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