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5C0B
Asym. Unit
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Asym.Unit (598 KB)
Biol.Unit 1 (297 KB)
Biol.Unit 2 (297 KB)
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Title
:
1E6 TCR IN COMPLEX WITH HLA-A02 CARRYING RQFGPDFPTI
Authors
:
P. J. Rizkallah, A. M. Bulek, D. K. Cole, A. K. Sewell
Date
:
12 Jun 15 (Deposition) - 04 May 16 (Release) - 08 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.03
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Immuno, Hla-A02, 1E6-Tcr, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. K. Cole, A. M. Bulek, G. Dolton, A. J. Schauenberg, B. Szomolay, W. Rittase, A. Trimby, P. Jothikumar, A. Fuller, A. Skowera, J. Rossjohn, C. Zhu, J. J. Miles, M. Peakman, L. Wooldridge, P. J. Rizkallah, A. K. Sewell
Hotspot Autoimmune T Cell Receptor Binding Underlies Pathogen And Insulin Peptide Cross-Reactivity.
J. Clin. Invest. V. 126 2191 2016
[
close entry info
]
Hetero Components
(4, 70)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1an: 1,2-ETHANEDIOL (EDOan)
1ao: 1,2-ETHANEDIOL (EDOao)
1ap: 1,2-ETHANEDIOL (EDOap)
1aq: 1,2-ETHANEDIOL (EDOaq)
1ar: 1,2-ETHANEDIOL (EDOar)
1as: 1,2-ETHANEDIOL (EDOas)
1at: 1,2-ETHANEDIOL (EDOat)
1au: 1,2-ETHANEDIOL (EDOau)
1av: 1,2-ETHANEDIOL (EDOav)
1aw: 1,2-ETHANEDIOL (EDOaw)
1ax: 1,2-ETHANEDIOL (EDOax)
1ay: 1,2-ETHANEDIOL (EDOay)
1az: 1,2-ETHANEDIOL (EDOaz)
1b: 1,2-ETHANEDIOL (EDOb)
1ba: 1,2-ETHANEDIOL (EDOba)
1bb: 1,2-ETHANEDIOL (EDObb)
1bc: 1,2-ETHANEDIOL (EDObc)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: TETRAETHYLENE GLYCOL (PG4a)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
55
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
6
Ligand/Ion
GLYCEROL
3
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
4
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(69, 69)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:36 , ASP A:37 , ALA A:40 , SER A:42 , GLN A:43 , ARG A:44 , HOH A:409
binding site for residue EDO A 301
02
AC2
SOFTWARE
SER A:2 , ARG A:6 , ASP A:102
binding site for residue EDO A 302
03
AC3
SOFTWARE
GLU A:19 , PRO A:20 , PHE A:22 , SER A:71 , GLN A:72 , HOH A:413
binding site for residue EDO A 303
04
AC4
SOFTWARE
ARG A:14 , ARG A:17 , GLY A:18 , GLU A:19 , ARG J:22
binding site for residue EDO A 304
05
AC5
SOFTWARE
ASP A:61 , THR A:64 , LYS A:68 , EDO E:303 , HOH E:420
binding site for residue EDO A 305
06
AC6
SOFTWARE
ALA A:158 , TYR A:159 , THR A:163 , GLN D:31 , TYR D:51 , ASP D:94
binding site for residue EDO A 307
07
AC7
SOFTWARE
ASP A:196 , HIS A:197 , GLU F:229
binding site for residue EDO A 308
08
AC8
SOFTWARE
GLN A:141 , GLU A:148
binding site for residue EDO A 309
09
AC9
SOFTWARE
GLN A:87 , HIS A:93 , MET B:0 , GLY J:16
binding site for residue GOL A 310
10
AD1
SOFTWARE
ALA A:90 , HOH A:451 , GLY J:3 , PRO J:25 , ILE J:26 , SER J:27
binding site for residue SO4 A 311
11
AD2
SOFTWARE
GLU A:89 , LYS J:24 , SER J:73 , HOH J:407
binding site for residue SO4 A 312
12
AD3
SOFTWARE
ARG A:234 , GLN A:242 , TYR B:10 , SER B:11 , HIS B:13 , PRO B:14 , HOH B:417 , HOH B:420
binding site for residue EDO B 301
13
AD4
SOFTWARE
ARG A:14 , ASP B:34 , GOL B:306 , HOH B:414
binding site for residue EDO B 302
14
AD5
SOFTWARE
GLN B:8 , VAL B:9 , VAL B:93 , LYS B:94 , MET B:99 , HOH B:403 , HOH B:432
binding site for residue EDO B 303
15
AD6
SOFTWARE
ARG B:45 , GLU B:47 , LYS B:48 , HOH B:404 , GLU J:221 , LYS J:231
binding site for residue EDO B 304
16
AD7
SOFTWARE
PRO J:124 , GLN J:235 , HOH J:417
binding site for residue EDO B 305
17
AD8
SOFTWARE
ILE A:23 , SER B:33 , ASP B:34 , LEU B:54 , EDO B:302 , HOH B:411 , HOH B:413
binding site for residue GOL B 306
18
AD9
SOFTWARE
GLN A:226 , ASN B:17 , GLY B:18 , THR B:73 , GLU B:74 , HOH B:431 , HOH B:433
binding site for residue SO4 B 307
19
AE1
SOFTWARE
SER D:12 , HOH D:401 , TYR I:71
binding site for residue EDO D 301
20
AE2
SOFTWARE
ARG D:77 , ARG I:77 , EDO I:306
binding site for residue EDO D 302
21
AE3
SOFTWARE
PRO D:14 , ALA D:17 , HOH D:401 , HOH D:424 , HOH D:433 , ASN I:55 , GLN I:64 , VAL I:65 , ASP I:66
binding site for residue EDO D 303
22
AE4
SOFTWARE
ARG D:41 , LYS D:42 , PHE E:91 , ARG E:112 , EDO E:307
binding site for residue EDO D 304
23
AE5
SOFTWARE
GLN A:155 , TYR D:32 , ARG D:92 , HOH D:405 , ALA E:101
binding site for residue EDO D 305
24
AE6
SOFTWARE
GLN D:64 , TYR D:71 , HOH D:428 , VAL I:13 , ILE I:18 , VAL I:19 , SER I:20
binding site for residue EDO D 306
25
AE7
SOFTWARE
ARG D:92 , TYR D:97 , LEU D:99 , LEU E:100 , ASN E:103
binding site for residue EDO E 301
26
AE8
SOFTWARE
LEU E:116 , GLU E:117 , ASP E:118 , ASN E:121 , TYR E:153 , ASP E:187
binding site for residue EDO E 302
27
AE9
SOFTWARE
LYS A:68 , EDO A:305 , PRO E:54 , ILE E:55 , ASP E:56 , ASP E:57
binding site for residue EDO E 303
28
AF1
SOFTWARE
GLY E:3 , VAL E:4 , ILE E:26 , PHE E:107
binding site for residue EDO E 304
29
AF2
SOFTWARE
VAL E:168 , HIS E:169 , SER E:170
binding site for residue EDO E 305
30
AF3
SOFTWARE
ARG E:85 , LYS E:102
binding site for residue EDO E 306
31
AF4
SOFTWARE
EDO D:304 , GLN E:37 , MET E:39 , VAL E:89 , HOH E:467
binding site for residue EDO E 307
32
AF5
SOFTWARE
ALA E:88 , ARG E:112 , LEU E:113 , SER E:114 , ASP E:155 , HIS E:156
binding site for residue EDO E 308
33
AF6
SOFTWARE
ARG E:9 , GLN E:215 , TYR E:217
binding site for residue EDO E 309
34
AF7
SOFTWARE
LYS A:146 , ASP E:30 , TYR E:31 , LEU E:96 , TRP E:97 , GLU E:98
binding site for residue EDO E 310
35
AF8
SOFTWARE
LEU D:88 , GLY D:102 , SER D:103 , GLN E:37 , THR E:38 , MET E:39 , GLY E:42 , LEU E:43
binding site for residue GOL E 311
36
AF9
SOFTWARE
ALA A:150 , HIS A:151 , TYR D:49 , ALA E:101 , LYS E:102 , HOH E:446
binding site for residue SO4 E 312
37
AG1
SOFTWARE
ARG E:22 , HOH E:409 , ARG F:17 , GLY F:18
binding site for residue SO4 E 313
38
AG2
SOFTWARE
TYR F:85 , TYR F:118 , LYS F:121 , ASP F:122 , ALA F:136 , ASP F:137 , EDO F:305
binding site for residue EDO F 301
39
AG3
SOFTWARE
GLU F:19 , PRO F:20 , SER F:71 , GLN F:72 , ARG F:75 , HOH F:405
binding site for residue EDO F 302
40
AG4
SOFTWARE
ARG F:44 , MET F:45 , TRP F:60 , GLN F:141
binding site for residue EDO F 303
41
AG5
SOFTWARE
VAL F:12 , ARG F:14 , ARG F:21 , HOH F:426 , ASP G:34 , EDO G:102
binding site for residue EDO F 304
42
AG6
SOFTWARE
TYR F:85 , GLN F:87 , TYR F:118 , ASP F:119 , LYS F:121 , EDO F:301
binding site for residue EDO F 305
43
AG7
SOFTWARE
PHE F:36 , ASP F:37 , ALA F:40 , SER F:42 , GLN F:43 , ARG F:44 , GLU F:46
binding site for residue EDO F 306
44
AG8
SOFTWARE
GLU F:53 , GLN F:54 , LYS F:127 , SER F:132 , TRP F:133 , HOH F:404
binding site for residue EDO F 307
45
AG9
SOFTWARE
SER F:4 , ARG F:6 , PHE F:8 , ASP F:29
binding site for residue GOL F 308
46
AH1
SOFTWARE
SER F:13 , ARG F:75 , LEU F:78 , HOH F:408 , HOH F:460
binding site for residue SO4 F 309
47
AH2
SOFTWARE
ARG F:21 , HOH F:409 , HIS G:51
binding site for residue SO4 F 310
48
AH3
SOFTWARE
TYR F:84 , ALA F:139 , THR F:142 , HOH F:482
binding site for residue SO4 F 311
49
AH4
SOFTWARE
ARG F:234 , GLN F:242 , TYR G:10 , SER G:11 , HIS G:13 , PRO G:14 , HOH G:211
binding site for residue EDO G 101
50
AH5
SOFTWARE
ARG F:21 , EDO F:304 , HOH F:409 , SER G:33 , ASP G:34 , HOH G:201
binding site for residue EDO G 102
51
AH6
SOFTWARE
ASP F:238 , ARG G:12 , HIS G:13
binding site for residue EDO G 103
52
AH7
SOFTWARE
VAL G:37 , ASP G:38
binding site for residue EDO G 104
53
AH8
SOFTWARE
LYS F:146 , PRO H:8 , THR H:9 , HOH H:205 , ASP J:30 , LEU J:96 , TRP J:97 , GLU J:98
binding site for residue EDO H 101
54
AH9
SOFTWARE
ARG I:92 , TYR I:97 , LEU I:99 , ASN J:103
binding site for residue EDO I 301
55
AI1
SOFTWARE
GLY I:59 , ARG I:60 , ARG I:77
binding site for residue EDO I 302
56
AI2
SOFTWARE
ASP I:112 , ILE I:113 , ASP I:140 , SER I:141 , GLN I:142
binding site for residue EDO I 303
57
AI3
SOFTWARE
LYS I:179 , SER I:180 , HOH I:432
binding site for residue EDO I 304
58
AI4
SOFTWARE
ARG I:60
binding site for residue EDO I 305
59
AI5
SOFTWARE
EDO D:302 , GLY I:16 , ILE I:18 , ARG I:77 , ASP I:78
binding site for residue EDO I 306
60
AI6
SOFTWARE
HOH F:442 , HOH F:459 , SER I:95 , HOH I:415
binding site for residue EDO I 307
61
AI7
SOFTWARE
ASP D:66 , SER D:69 , TYR D:71 , SER I:12 , VAL I:13
binding site for residue GOL I 308
62
AI8
SOFTWARE
GLN F:255 , ARG F:273 , TRP F:274 , GLU F:275 , GLU J:240 , TRP J:242
binding site for residue EDO J 301
63
AI9
SOFTWARE
ARG A:17 , PRO J:8 , ARG J:9 , HOH J:454
binding site for residue EDO J 302
64
AJ1
SOFTWARE
LEU J:185
binding site for residue EDO J 303
65
AJ2
SOFTWARE
LEU J:116 , GLU J:117 , ASP J:118 , ASN J:121 , TYR J:153 , ASP J:187
binding site for residue EDO J 304
66
AJ3
SOFTWARE
HIS J:29 , ASP J:30 , ASN J:51 , ASN J:52 , MET J:69 , ALA J:72 , HOH J:441
binding site for residue EDO J 305
67
AJ4
SOFTWARE
ARG J:9 , GLU J:158 , TYR J:217
binding site for residue EDO J 306
68
AJ5
SOFTWARE
ASN A:86 , ASP J:63 , ARG J:64 , PHE J:65 , GLN J:80 , HOH J:431
binding site for residue GOL J 307
69
AJ6
SOFTWARE
LEU I:88 , GLY I:102 , SER I:103 , GLN J:37 , THR J:38 , MET J:39 , GLY J:42 , LEU J:43
binding site for residue PG4 J 308
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
(0, 0)
Info
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