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5BYQ
Asym. Unit
Info
Asym.Unit (379 KB)
Biol.Unit 1 (370 KB)
Biol.Unit 2 (187 KB)
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(1)
Title
:
SEMISYNTHETIC [FEFE]-HYDROGENASE CPI WITH OXODITHIOLATO-BRIDGED [2FE] COFACTOR
Authors
:
J. Esselborn, N. Muraki, V. Engelbrecht, E. Hofmann, G. Kurisu, T. Happ
Date
:
10 Jun 15 (Deposition) - 11 Nov 15 (Release) - 11 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrogenase, H-Cluster, Oxidoreductase, Semisynthetic Enzyme
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Esselborn, N. Muraki, K. Klein, V. Engelbrecht, N. Metzler-Nolte, U. -P. Apfel, E. Hofmann, G. Kurisu, T. Happe
A Structural View Of Synthetic Cofactor Integration Into [Fefe]-Hydrogenases
Chem Sci 2015
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: BIS(CYANIDO-KAPPAC)(DICARBONYL)-MU... (4WVa)
1b: BIS(CYANIDO-KAPPAC)(DICARBONYL)-MU... (4WVb)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
5a: IRON/SULFUR CLUSTER (SF4a)
5b: IRON/SULFUR CLUSTER (SF4b)
5c: IRON/SULFUR CLUSTER (SF4c)
5d: IRON/SULFUR CLUSTER (SF4d)
5e: IRON/SULFUR CLUSTER (SF4e)
5f: IRON/SULFUR CLUSTER (SF4f)
5g: IRON/SULFUR CLUSTER (SF4g)
5h: IRON/SULFUR CLUSTER (SF4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
4WV
2
Ligand/Ion
BIS(CYANIDO-KAPPAC)(DICARBONYL)-MU-(OXOMETHYLIDENE)-MU-(OXYDIMETHANETHIOLATE-1KAPPAS:2KAPPAS)DIIRON(2+)
2
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
4
Ligand/Ion
MAGNESIUM ION
5
SF4
8
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:300 , PRO A:301 , CYS A:355 , CYS A:499 , CYS A:503 , GLY A:506 , 4WV A:606
binding site for residue SF4 A 601
02
AC2
SOFTWARE
CYS A:157 , THR A:163 , MET A:166 , CYS A:190 , LEU A:191 , LEU A:192 , CYS A:193 , GLY A:194 , CYS A:196
binding site for residue SF4 A 602
03
AC3
SOFTWARE
CYS A:147 , LEU A:148 , LEU A:149 , CYS A:150 , GLY A:151 , CYS A:153 , ILE A:177 , CYS A:200 , PRO A:201 , VAL A:202 , LEU A:205
binding site for residue SF4 A 603
04
AC4
SOFTWARE
HIS A:94 , GLU A:95 , PHE A:96 , LYS A:97 , CYS A:98 , CYS A:101 , CYS A:107 , LYS A:146 , VAL A:202 , ALA A:203
binding site for residue SF4 A 604
05
AC5
SOFTWARE
LEU A:33 , CYS A:34 , PHE A:35 , LYS A:45 , CYS A:46 , GLU A:47 , CYS A:49 , CYS A:62
binding site for residue FES A 605
06
AC6
SOFTWARE
ALA A:230 , PRO A:231 , SER A:232 , ILE A:268 , ALA A:272 , CYS A:299 , PRO A:324 , GLN A:325 , MET A:353 , PRO A:354 , CYS A:355 , LYS A:358 , PHE A:417 , MET A:497 , CYS A:503 , SF4 A:601
binding site for residue 4WV A 606
07
AC7
SOFTWARE
LEU A:218 , HOH A:734 , HOH A:771 , HOH A:795 , HOH A:886 , HOH A:910
binding site for residue MG A 607
08
AC8
SOFTWARE
ASN A:40 , ASP A:42 , HOH A:748 , HOH A:891 , HOH A:906 , HOH A:932
binding site for residue MG A 608
09
AC9
SOFTWARE
LYS A:223 , LYS A:333 , LYS A:345 , VAL A:347 , PHE A:348 , LEU A:372 , ARG A:373 , ASP A:376 , HOH A:719
binding site for residue GOL A 609
10
AD1
SOFTWARE
CYS B:300 , PRO B:301 , CYS B:355 , SER B:357 , CYS B:499 , CYS B:503 , GLY B:506 , 4WV B:606
binding site for residue SF4 B 601
11
AD2
SOFTWARE
LEU B:140 , CYS B:157 , THR B:163 , MET B:166 , CYS B:190 , LEU B:191 , LEU B:192 , CYS B:193 , GLY B:194 , CYS B:196
binding site for residue SF4 B 602
12
AD3
SOFTWARE
CYS B:147 , LEU B:148 , LEU B:149 , CYS B:150 , GLY B:151 , CYS B:153 , CYS B:200 , VAL B:202 , ALA B:204 , LEU B:205
binding site for residue SF4 B 603
13
AD4
SOFTWARE
HIS B:94 , GLU B:95 , PHE B:96 , LYS B:97 , CYS B:98 , CYS B:101 , CYS B:107 , LYS B:146 , VAL B:202 , ALA B:203
binding site for residue SF4 B 604
14
AD5
SOFTWARE
LEU B:33 , CYS B:34 , PHE B:35 , LYS B:45 , CYS B:46 , GLU B:47 , CYS B:49 , CYS B:62
binding site for residue FES B 605
15
AD6
SOFTWARE
ALA B:230 , PRO B:231 , SER B:232 , ILE B:268 , ALA B:272 , CYS B:299 , PRO B:324 , GLN B:325 , MET B:353 , PRO B:354 , CYS B:355 , LYS B:358 , PHE B:417 , MET B:497 , CYS B:503 , SF4 B:601
binding site for residue 4WV B 606
16
AD7
SOFTWARE
LEU B:218 , HOH B:768 , HOH B:774 , HOH B:813 , HOH B:873 , HOH B:967
binding site for residue MG B 607
17
AD8
SOFTWARE
ASN B:40 , ASP B:42 , HOH B:758 , HOH B:919 , HOH B:921 , HOH B:961
binding site for residue MG B 608
18
AD9
SOFTWARE
LYS B:223 , LYS B:333 , LYS B:345 , VAL B:347 , PHE B:348 , ARG B:373 , ASP B:376 , HOH B:792
binding site for residue GOL B 609
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SAPs(SNPs)/Variants
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Exons
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Asym.Unit (379 KB)
Header - Asym.Unit
Biol.Unit 1 (370 KB)
Header - Biol.Unit 1
Biol.Unit 2 (187 KB)
Header - Biol.Unit 2
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