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Biol. Unit 1
Info
Asym.Unit (148 KB)
Biol.Unit 1 (142 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE AT 1.70A RESOLUTION OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A 4-CHLORO-2-FLUORO SUBSTITUTED PYRAZOLOPYRIMIDINONE COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR.
Authors
:
D. O. Somers
Date
:
08 Jun 15 (Deposition) - 01 Jul 15 (Release) - 07 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fold Type Iv, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Bertrand, N. Ancellin, B. Beaufils, R. P. Bingham, J. A. Borthwick, A. B. Boullay, E. Boursier, P. S. Carter, C. W. Chung, I. Churcher, N. Dodic, M. H. Fouchet, C. Fournier, P. L. Francis, L. A. Gummer, K. Herry, A. Hobbs, C. I. Hobbs, P. Homes, C. Jamieson, E. Nicodeme, S. D. Pickett, I. H. Reid, G. L. Simpson, L. A. Sloan, S. E. Smith, D. O. Somers, C. Spitzfaden, C. J. Suckling, K. Valko, Y. Washio, R. J. Young
The Discovery Of In Vivo Active Mitochondrial Branched-Chai Aminotransferase (Bcatm) Inhibitors By Hybridizing Fragment And Hts Hits.
J. Med. Chem. V. 58 7140 2015
[
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Hetero Components
(5, 24)
Info
All Hetero Components
1a: 5-BUTYL-2-[(4-CHLORO-2-FLUOROBENZY... (4W4a)
1b: 5-BUTYL-2-[(4-CHLORO-2-FLUOROBENZY... (4W4b)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: DIMETHYL SULFOXIDE (DMSa)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
4q: 1,2-ETHANEDIOL (EDOq)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
6a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
6b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4W4
2
Ligand/Ion
5-BUTYL-2-[(4-CHLORO-2-FLUOROBENZYL)AMINO]-7-OXO-4,7-DIHYDROPYRAZOLO[1,5-A]PYRIMIDINE-3-CARBONITRILE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
4
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
5
GOL
2
Ligand/Ion
GLYCEROL
6
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:99 , ARG A:192 , LYS A:202 , TYR A:207 , GLU A:237 , THR A:240 , ASN A:242 , LEU A:266 , GLY A:268 , VAL A:269 , VAL A:270 , GLY A:312 , THR A:313 , 4W4 A:402 , HOH A:568 , HOH A:669 , HOH A:693
binding site for residue PLP A 401
02
AC2
SOFTWARE
TYR A:141 , ARG A:143 , VAL A:182 , LYS A:202 , GLN A:224 , VAL A:238 , GLY A:239 , THR A:240 , MET A:241 , GLY A:312 , ALA A:314 , CYS A:315 , CYS A:318 , PLP A:401 , EDO A:403 , HOH A:630 , HOH A:674 , LEU B:153 , VAL B:155
binding site for residue 4W4 A 402
03
AC3
SOFTWARE
CYS A:315 , 4W4 A:402 , HOH A:668
binding site for residue EDO A 403
04
AC4
SOFTWARE
ASP A:276 , THR A:280 , GLU A:348 , ARG A:357 , HIS A:359
binding site for residue EDO A 404
05
AC5
SOFTWARE
ARG A:102 , PRO A:267 , HOH A:652
binding site for residue EDO A 405
06
AC6
SOFTWARE
TYR A:246 , ARG A:306 , ARG A:344 , HOH A:575
binding site for residue EDO A 406
07
AC7
SOFTWARE
GLU A:42 , LEU A:59 , THR A:60 , HOH A:594
binding site for residue EDO A 407
08
AC8
SOFTWARE
GLN A:234 , ASN A:262 , THR A:290 , HOH A:663
binding site for residue EDO A 408
09
AC9
SOFTWARE
TRP A:94 , HOH A:736
binding site for residue EDO A 409
10
AD1
SOFTWARE
ARG A:106 , GLY A:196 , GLY A:197 , HOH A:619 , ILE B:191 , PRO B:209
binding site for residue EDO A 410
11
AD2
SOFTWARE
GLN A:16 , TRP A:194 , TYR A:229 , GLY A:230 , HOH A:512 , HOH A:534 , HOH A:617 , TRP B:194
binding site for residue EDO A 411
12
AD3
SOFTWARE
GLU A:216 , HOH A:692
binding site for residue EDO A 412
13
AD4
SOFTWARE
TRP A:94 , ASP A:98 , LYS A:114
binding site for residue EDO A 413
14
AD5
SOFTWARE
ARG A:102 , ASN A:200 , TYR A:201 , CL A:416 , HOH A:604 , HOH A:694 , HOH A:717
binding site for residue EDO A 414
15
AD6
SOFTWARE
ASN A:200 , LEU A:261 , ASN A:262 , HOH A:513 , HOH A:717
binding site for residue EDO A 415
16
AD7
SOFTWARE
EDO A:414 , HOH A:513
binding site for residue CL A 416
17
AD8
SOFTWARE
PRO A:260 , LEU A:261 , HOH A:520 , HOH A:660
binding site for residue GOL A 417
18
AD9
SOFTWARE
VAL A:155 , TYR B:141 , ARG B:143 , VAL B:182 , LYS B:202 , GLN B:224 , VAL B:238 , GLY B:239 , THR B:240 , MET B:241 , GLY B:312 , ALA B:314 , CYS B:315 , CYS B:318 , PLP B:401 , EDO B:404 , HOH B:640 , HOH B:681
binding site for residue 4W4 B 402
19
AE1
SOFTWARE
MET B:40 , GLU B:42 , LEU B:59 , THR B:60 , HOH B:595
binding site for residue DMS B 403
20
AE2
SOFTWARE
PHE B:30 , TYR B:173 , 4W4 B:402 , HOH B:766
binding site for residue EDO B 404
21
AE3
SOFTWARE
ASP B:276 , THR B:280 , GLU B:348 , HIS B:359 , TRP B:361 , HOH B:520
binding site for residue EDO B 405
22
AE4
SOFTWARE
TYR B:246 , ARG B:306 , GLU B:340 , ARG B:344 , HOH B:652
binding site for residue EDO B 406
23
AE5
SOFTWARE
GLU B:336 , ASN B:337 , HOH B:551 , HOH B:592
binding site for residue EDO B 407
24
AE6
SOFTWARE
HOH B:539 , HOH B:674 , HOH B:718
binding site for residue GOL B 409
25
AE7
SOFTWARE
LEU B:74 , PHE B:75 , ARG B:99 , SER B:103 , ARG B:192 , TYR B:201 , LEU B:203 , TYR B:207 , GLU B:237 , THR B:240 , ASN B:242 , LEU B:266 , GLY B:268 , VAL B:269 , VAL B:270 , GLY B:312 , THR B:313 , 4W4 B:402 , HOH B:575 , HOH B:588 , HOH B:659
binding site for Di-peptide PLP B 401 and LYS B 202
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(0, 0)
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Asym.Unit (148 KB)
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