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5BWV
Biol. Unit 1
Info
Asym.Unit (148 KB)
Biol.Unit 1 (141 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE AT 1.86A RESOLUTION OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A PYRAZOLOPYRIMIDINONE COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR.
Authors
:
D. O. Somers
Date
:
08 Jun 15 (Deposition) - 01 Jul 15 (Release) - 07 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fold Type Iv, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Bertrand, N. Ancellin, B. Beaufils, R. P. Bingham, J. A. Borthwick, A. B. Boullay, E. Boursier, P. S. Carter, C. W. Chung, I. Churcher, N. Dodic, M. H. Fouchet, C. Fournier, P. L. Francis, L. A. Gummer, K. Herry, A. Hobbs, C. I. Hobbs, P. Homes, C. Jamieson, E. Nicodeme, S. D. Pickett, I. H. Reid, G. L. Simpson, L. A. Sloan, S. E. Smith, D. O. Somers, C. Spitzfaden, C. J. Suckling, K. Valko, Y. Washio, R. J. Young
The Discovery Of In Vivo Active Mitochondrial Branched-Chai Aminotransferase (Bcatm) Inhibitors By Hybridizing Fragment And Hts Hits.
J. Med. Chem. V. 58 7140 2015
[
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: 2-[(4-CHLOROBENZYL)AMINO]-7-OXO-5-... (775a)
1b: 2-[(4-CHLOROBENZYL)AMINO]-7-OXO-5-... (775b)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
4a: GLYCEROL (GOLa)
5a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
5b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
775
2
Ligand/Ion
2-[(4-CHLOROBENZYL)AMINO]-7-OXO-5-PROPYL-4,7-DIHYDROPYRAZOLO[1,5-A]PYRIMIDINE-3-CARBONITRILE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
1
Ligand/Ion
GLYCEROL
5
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:99 , LYS A:202 , TYR A:207 , GLU A:237 , THR A:240 , ASN A:242 , LEU A:266 , GLY A:268 , VAL A:269 , VAL A:270 , GLY A:312 , THR A:313 , HOH A:522 , HOH A:574 , HOH A:640 , HOH A:758
binding site for residue PLP A 401
02
AC2
SOFTWARE
TYR A:141 , ARG A:143 , TYR A:173 , VAL A:182 , GLN A:224 , VAL A:238 , THR A:240 , MET A:241 , GLY A:312 , ALA A:314 , CYS A:315 , CYS A:318 , VAL A:320 , EDO A:405 , HOH A:659 , HOH A:710 , VAL B:155
binding site for residue 775 A 402
03
AC3
SOFTWARE
ARG A:92 , TRP A:94 , EDO A:415 , HOH A:672 , HOH A:791 , HOH A:809
binding site for residue CL A 404
04
AC4
SOFTWARE
TYR A:173 , GLN A:224 , 775 A:402 , HOH A:506 , HOH A:518 , HOH A:739 , VAL B:155
binding site for residue EDO A 405
05
AC5
SOFTWARE
VAL A:155 , HOH A:512 , HOH A:536 , HOH A:687 , TYR B:173 , GLN B:224 , THR B:240 , 775 B:402
binding site for residue EDO A 406
06
AC6
SOFTWARE
HIS A:359 , TRP A:361 , HOH A:527
binding site for residue EDO A 407
07
AC7
SOFTWARE
ARG A:99 , ARG A:102 , PRO A:267 , GLY A:268 , VAL A:269 , HOH A:699 , HOH A:744
binding site for residue EDO A 408
08
AC8
SOFTWARE
TYR A:246 , ARG A:306 , ARG A:344 , HOH A:708
binding site for residue EDO A 409
09
AC9
SOFTWARE
GLN A:234 , ASN A:262 , HOH A:554 , HOH A:734
binding site for residue EDO A 410
10
AD1
SOFTWARE
TYR A:229 , GLY A:230 , HOH A:505 , HOH A:560 , HOH A:580 , TRP B:194
binding site for residue EDO A 411
11
AD2
SOFTWARE
GLY A:83 , LYS A:84 , ASP A:85 , ARG A:89 , GLY A:355
binding site for residue EDO A 412
12
AD3
SOFTWARE
HIS A:249 , GLN A:295 , GLY B:83 , LYS B:84 , ASP B:85 , ILE B:356 , HOH B:536 , HOH B:585
binding site for residue EDO A 413
13
AD4
SOFTWARE
GLU A:116 , GLU A:119 , HOH A:557 , HOH A:558
binding site for residue EDO A 414
14
AD5
SOFTWARE
TRP A:94 , CL A:404 , HOH A:552 , HOH A:672 , HOH A:791
binding site for residue EDO A 415
15
AD6
SOFTWARE
GLN A:11 , LEU A:12 , ASP A:187 , PHE A:190 , GLU A:216 , ARG A:220
binding site for residue EDO A 416
16
AD7
SOFTWARE
ASN A:337 , GLY A:338 , HOH A:592 , HOH A:693 , HOH A:777 , ASN B:329
binding site for residue GOL A 417
17
AD8
SOFTWARE
VAL A:155 , EDO A:406 , PHE B:75 , TYR B:141 , ARG B:143 , TYR B:173 , VAL B:182 , GLN B:224 , VAL B:238 , THR B:240 , MET B:241 , GLY B:312 , ALA B:314 , CYS B:315 , CYS B:318 , VAL B:320 , HOH B:506 , HOH B:656
binding site for residue 775 B 402
18
AD9
SOFTWARE
HOH B:903
binding site for residue CL B 403
19
AE1
SOFTWARE
ARG B:92 , TRP B:94 , HOH B:725 , HOH B:793 , HOH B:970
binding site for residue CL B 404
20
AE2
SOFTWARE
ASP B:276 , THR B:280 , GLU B:348 , HIS B:359 , TRP B:361 , HOH B:583
binding site for residue EDO B 405
21
AE3
SOFTWARE
TYR B:246 , ARG B:306 , GLU B:340 , ARG B:344 , HOH B:642 , HOH B:660
binding site for residue EDO B 406
22
AE4
SOFTWARE
GLU B:42 , ARG B:52 , LEU B:59 , THR B:60 , LEU B:162 , HOH B:547 , HOH B:754
binding site for residue EDO B 407
23
AE5
SOFTWARE
GLU B:116 , GLU B:119 , LYS B:326 , HOH B:568
binding site for residue EDO B 408
24
AE6
SOFTWARE
LEU B:74 , PHE B:75 , ARG B:99 , SER B:103 , ARG B:192 , TYR B:201 , LEU B:203 , TYR B:207 , GLU B:237 , THR B:240 , ASN B:242 , LEU B:266 , GLY B:268 , VAL B:269 , VAL B:270 , GLY B:312 , THR B:313 , HOH B:548 , HOH B:570 , HOH B:615 , HOH B:747
binding site for Di-peptide PLP B 401 and LYS B 202
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (148 KB)
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