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5BWU
Biol. Unit 1
Info
Asym.Unit (138 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE AT 2.17A RESOLUTION OF HUMAN MITOCHONDRIAL BRANCHED CHAIN AMINOTRANSFERASE (BCATM) COMPLEXED WITH A TRIAZOLOPYRIMIDINONE COMPOUND AND AN INTERNAL ALDIMINE LINKED PLP COFACTOR.
Authors
:
D. O. Somers
Date
:
08 Jun 15 (Deposition) - 01 Jul 15 (Release) - 07 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fold Type Iv, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. M. Bertrand, N. Ancellin, B. Beaufils, R. P. Bingham, J. A. Borthwick, A. B. Boullay, E. Boursier, P. S. Carter, C. W. Chung, I. Churcher, N. Dodic, M. H. Fouchet, C. Fournier, P. L. Francis, L. A. Gummer, K. Herry, A. Hobbs, C. I. Hobbs, P. Homes, C. Jamieson, E. Nicodeme, S. D. Pickett, I. H. Reid, G. L. Simpson, L. A. Sloan, S. E. Smith, D. O. Somers, C. Spitzfaden, C. J. Suckling, K. Valko, Y. Washio, R. J. Young
The Discovery Of In Vivo Active Mitochondrial Branched-Chai Aminotransferase (Bcatm) Inhibitors By Hybridizing Fragment And Hts Hits.
J. Med. Chem. V. 58 7140 2015
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: 2-[(4-BROMOBENZYL)AMINO]-5-PROPYL[... (4VRa)
1b: 2-[(4-BROMOBENZYL)AMINO]-5-PROPYL[... (4VRb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
4VR
2
Ligand/Ion
2-[(4-BROMOBENZYL)AMINO]-5-PROPYL[1,2,4]TRIAZOLO[1,5-A]PYRIMIDIN-7(4H)-ONE
2
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:99 , ARG A:192 , LYS A:202 , TYR A:207 , GLU A:237 , THR A:240 , GLY A:268 , VAL A:269 , VAL A:270 , GLY A:312 , THR A:313 , HOH A:544 , HOH A:573 , HOH A:663
binding site for residue PLP A 401
02
AC2
SOFTWARE
TYR A:141 , ARG A:143 , VAL A:182 , GLN A:224 , VAL A:238 , THR A:240 , MET A:241 , ALA A:314 , CYS A:315 , CYS A:318 , VAL A:320 , EDO A:403 , HOH A:593 , HOH A:665 , HOH A:701 , HOH A:707 , LEU B:153 , VAL B:155
binding site for residue 4VR A 402
03
AC3
SOFTWARE
PHE A:30 , ALA A:314 , CYS A:315 , 4VR A:402 , HOH A:821
binding site for residue EDO A 403
04
AC4
SOFTWARE
ASP A:276 , THR A:280 , GLU A:348 , HIS A:359
binding site for residue EDO A 404
05
AC5
SOFTWARE
LEU A:261 , ASN A:262 , GLY A:263 , EDO A:411 , HOH A:597
binding site for residue EDO A 405
06
AC6
SOFTWARE
TYR A:246 , LEU A:341 , ARG A:344 , HOH A:529
binding site for residue EDO A 406
07
AC7
SOFTWARE
GLU A:42 , LEU A:59 , THR A:60 , HOH A:509 , HOH A:554 , HOH A:691
binding site for residue EDO A 407
08
AC8
SOFTWARE
TRP A:94 , HOH A:576
binding site for residue EDO A 408
09
AC9
SOFTWARE
ARG A:106 , GLY A:196 , HOH A:588 , ILE B:191 , PRO B:209 , HOH B:628
binding site for residue EDO A 409
10
AD1
SOFTWARE
LEU A:261 , ASN A:262 , HOH A:526 , HIS B:359
binding site for residue EDO A 410
11
AD2
SOFTWARE
ASN A:200 , LEU A:261 , GLY A:263 , EDO A:405 , HOH A:512
binding site for residue EDO A 411
12
AD3
SOFTWARE
VAL A:155 , TYR B:141 , ARG B:143 , VAL B:182 , GLN B:224 , VAL B:238 , THR B:240 , MET B:241 , ALA B:314 , CYS B:315 , CYS B:318 , EDO B:403 , HOH B:581 , HOH B:585 , HOH B:646 , HOH B:687
binding site for residue 4VR B 402
13
AD4
SOFTWARE
PHE B:30 , TYR B:173 , CYS B:315 , 4VR B:402
binding site for residue EDO B 403
14
AD5
SOFTWARE
ASP B:276 , THR B:280 , GLU B:348 , HIS B:359 , TRP B:361
binding site for residue EDO B 404
15
AD6
SOFTWARE
TYR B:246 , ARG B:306 , GLU B:340 , ARG B:344 , HOH B:527
binding site for residue EDO B 405
16
AD7
SOFTWARE
MET B:40 , GLU B:42 , LEU B:59 , THR B:60 , HOH B:657
binding site for residue EDO B 406
17
AD8
SOFTWARE
ASN B:200 , LEU B:261 , HOH B:509 , HOH B:514 , HOH B:606
binding site for residue EDO B 407
18
AD9
SOFTWARE
LEU B:74 , PHE B:75 , ARG B:99 , SER B:103 , ARG B:192 , TYR B:201 , LEU B:203 , TYR B:207 , GLU B:237 , THR B:240 , ASN B:242 , LEU B:266 , GLY B:268 , VAL B:269 , VAL B:270 , GLY B:312 , THR B:313 , HOH B:524 , HOH B:537 , HOH B:610
binding site for Di-peptide PLP B 401 and LYS B 202
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SAPs(SNPs)/Variants
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Asymmetric Unit 1
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (133 KB)
Header - Biol.Unit 1
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