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5BVG
Asym. Unit
Info
Asym.Unit (718 KB)
Biol.Unit 1 (709 KB)
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(1)
Title
:
SELENIUM INCORPORATED NITROGENASE MOFE-PROTEIN (AV1-SE2B) FROM A. VINELANDII
Authors
:
T. Spatzal, K. A. Perez, J. B. Howard, D. C. Rees
Date
:
05 Jun 15 (Deposition) - 30 Dec 15 (Release) - 27 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Nitrogenase, Femo-Cofactor, Se-Incorporation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Spatzal, K. A. Perez, J. B. Howard, D. C. Rees
Catalysis-Dependent Selenium Incorporation And Migration In The Nitrogenase Active Site Iron-Molybdenum Cofactor.
Elife V. 4 11620 2015
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Hetero Components
(7, 21)
Info
All Hetero Components
2a: FE(8)-S(7) CLUSTER (CLFa)
2b: FE(8)-S(7) CLUSTER (CLFb)
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
4a: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAa)
4b: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAb)
5a: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICGa)
5b: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICGb)
6a: IMIDAZOLE (IMDa)
6b: IMIDAZOLE (IMDb)
6c: IMIDAZOLE (IMDc)
6d: IMIDAZOLE (IMDd)
6e: IMIDAZOLE (IMDe)
6f: IMIDAZOLE (IMDf)
6g: IMIDAZOLE (IMDg)
6h: IMIDAZOLE (IMDh)
6i: IMIDAZOLE (IMDi)
7a: SELENIUM ATOM (SEa)
7b: SELENIUM ATOM (SEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
CLF
2
Ligand/Ion
FE(8)-S(7) CLUSTER
3
FE2
2
Ligand/Ion
FE (II) ION
4
HCA
2
Ligand/Ion
3-HYDROXY-3-CARBOXY-ADIPIC ACID
5
ICG
2
Ligand/Ion
IRON-SULFUR-MOLYBDENUM CLUSTER WITH INTERSTITIAL CARBONWITH SELENIUM INCORPORATED
6
IMD
9
Ligand/Ion
IMIDAZOLE
7
SE
2
Ligand/Ion
SELENIUM ATOM
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:65 , GLN A:191 , GLY A:424 , ILE A:425 , HIS A:442 , ICG A:502 , HOH A:604 , HOH A:637 , HOH A:660 , HOH A:663 , HOH A:681 , HOH A:709 , HOH A:745 , HOH A:775 , HOH B:710 , HOH B:814
binding site for residue HCA A 501
02
AC2
SOFTWARE
VAL A:70 , ARG A:96 , HIS A:195 , TYR A:229 , CYS A:275 , GLY A:356 , GLY A:357 , ARG A:359 , PHE A:381 , HIS A:442 , HCA A:501
binding site for residue ICG A 502
03
AC3
SOFTWARE
TRP A:294 , HOH A:710
binding site for residue IMD A 503
04
AC4
SOFTWARE
ARG A:93 , THR A:111 , PHE B:450 , SE B:605 , HOH B:1033
binding site for residue CL A 504
05
AC5
SOFTWARE
CYS A:62 , TYR A:64 , GLY A:87 , CYS A:88 , TYR A:91 , CYS A:154 , GLY A:185 , CYS B:70 , SER B:92 , CYS B:95 , TYR B:98 , CYS B:153 , SER B:188
binding site for residue CLF A 505
06
AC6
SOFTWARE
LEU B:253 , ASP B:256 , GLY B:275 , THR B:276 , GLU B:280
binding site for residue IMD B 601
07
AC7
SOFTWARE
SER B:482 , THR B:483 , GLN B:492 , THR B:496 , HOH B:753
binding site for residue IMD B 602
08
AC8
SOFTWARE
GLY A:157 , GLU B:120 , ALA B:123 , GLN C:41 , LYS C:44
binding site for residue IMD B 603
09
AC9
SOFTWARE
ASP B:353 , ASP B:357 , HOH B:789 , ARG D:108 , GLU D:109 , HOH D:910
binding site for residue FE2 B 604
10
AD1
SOFTWARE
MET A:112 , CL A:504 , ASN B:65 , ARG B:453 , HOH B:800
binding site for residue SE B 605
11
AD2
SOFTWARE
ARG B:108 , GLU B:109 , HOH B:929 , ASP D:353 , ASP D:357 , HOH D:798
binding site for residue FE2 B 606
12
AD3
SOFTWARE
ALA C:65 , GLN C:191 , GLY C:424 , ILE C:425 , HIS C:442 , ICG C:502 , HOH C:618 , HOH C:634 , HOH C:681 , HOH C:686 , HOH C:700 , HOH C:764 , HOH C:788 , HOH C:804 , HOH D:711 , HOH D:772
binding site for residue HCA C 501
13
AD4
SOFTWARE
VAL C:70 , ARG C:96 , HIS C:195 , TYR C:229 , CYS C:275 , GLY C:356 , GLY C:357 , ARG C:359 , PHE C:381 , HIS C:442 , HCA C:501
binding site for residue ICG C 502
14
AD5
SOFTWARE
TRP C:294 , HOH C:830
binding site for residue IMD C 503
15
AD6
SOFTWARE
ARG C:93 , THR C:111 , PHE D:450 , ARG D:453 , SE D:604 , HOH D:1049
binding site for residue CL C 504
16
AD7
SOFTWARE
GLY C:406 , GLU C:410 , ILE C:430 , HOH C:757 , HOH C:848 , HOH C:864 , PHE D:269
binding site for residue IMD C 505
17
AD8
SOFTWARE
CYS C:62 , TYR C:64 , GLY C:87 , CYS C:88 , TYR C:91 , CYS C:154 , GLY C:185 , CYS D:70 , SER D:92 , CYS D:95 , TYR D:98 , CYS D:153 , SER D:188
binding site for residue CLF C 506
18
AD9
SOFTWARE
SER D:482 , THR D:483 , GLN D:492 , THR D:496 , HOH D:723
binding site for residue IMD D 601
19
AE1
SOFTWARE
LEU D:253 , ASP D:256 , GLY D:275 , THR D:276 , GLU D:280 , HOH D:841
binding site for residue IMD D 602
20
AE2
SOFTWARE
GLN A:41 , LYS A:44 , GLY C:157 , GLU D:120 , ALA D:123
binding site for residue IMD D 603
21
AE3
SOFTWARE
MET C:112 , CL C:504 , ASN D:65 , ARG D:453 , HOH D:896
binding site for residue SE D 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (718 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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