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5BV2
Asym. Unit
Info
Asym.Unit (2.1 MB)
Biol.Unit 1, α-C (2.1 MB)
Biol.Unit 1 (2.1 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI HPII CATALASE VARIANT
Authors
:
J. Wang, I. V. Lomkalin
Date
:
04 Jun 15 (Deposition) - 24 Jun 15 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.53
Chains
:
Asym. Unit : P,Q,R,S
Biol. Unit 1: P,Q,R,S (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wang, I. V. Lomkalin
Influence Of Weak-Intensity Data, Ordered Water Molecules, And Hydrogen Atoms On The Refinement Of A Large Protein Crystal Structure
To Be Published
[
close entry info
]
Hetero Components
(8, 72)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDa)
3b: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDb)
3c: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDc)
3d: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDd)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
6a: TETRAETHYLENE GLYCOL (PG4a)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
39
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
11
Ligand/Ion
GLYCEROL
3
HDD
4
Ligand/Ion
CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
PEG
10
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
3
Ligand/Ion
TRIETHYLENE GLYCOL
8
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(72, 72)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
70: AJ7 (SOFTWARE)
71: AJ8 (SOFTWARE)
72: AJ9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG P:125 , ILE P:126 , VAL P:127 , HIS P:128 , ARG P:165 , GLY P:184 , VAL P:199 , GLY P:200 , ASN P:201 , PHE P:214 , ILE P:274 , HIS P:275 , PHE P:391 , LEU P:407 , ARG P:411 , SER P:414 , TYR P:415 , THR P:418 , GLN P:419 , GOL P:802 , HOH P:1025 , HOH P:1117
binding site for residue HDD P 801
02
AC2
SOFTWARE
VAL P:127 , HIS P:128 , VAL P:169 , ASN P:201 , PHE P:206 , PHE P:214 , HDD P:801
binding site for residue GOL P 802
03
AC3
SOFTWARE
GLY P:98 , ASP P:99 , HOH P:1358 , HOH R:1343 , GLY S:491 , ASN S:492 , HOH S:1523
binding site for residue EDO P 803
04
AC4
SOFTWARE
THR P:516 , ALA P:592 , HOH P:921 , ASP R:712 , GLN R:713 , HOH R:1649 , HOH R:1974
binding site for residue EDO P 804
05
AC5
SOFTWARE
PRO P:517 , PHE P:518 , ARG P:521 , HOH P:940 , HOH P:1062
binding site for residue EDO P 805
06
AC6
SOFTWARE
LYS P:709 , PRO P:752 , HOH P:1247 , ASN S:682 , THR S:707
binding site for residue EDO P 806
07
AC7
SOFTWARE
TYR P:634 , SER P:635 , ASP P:674 , ASN P:678 , HOH P:1251
binding site for residue EDO P 807
08
AC8
SOFTWARE
ASP P:155 , ASN P:157 , LYS P:158 , HOH P:1095 , HOH P:1335 , HOH P:1524
binding site for residue EDO P 808
09
AC9
SOFTWARE
VAL P:179 , GLN P:231 , GLN P:233 , THR P:311 , HOH P:936 , HOH P:1102 , HOH P:1145 , GLY S:312
binding site for residue EDO P 809
10
AD1
SOFTWARE
PRO P:594 , ASP P:595 , GLY P:596 , ALA P:737 , HOH P:961 , HOH P:1123 , HOH P:1636 , HOH P:1784
binding site for residue EDO P 810
11
AD2
SOFTWARE
PHE P:347 , PHE P:349 , PHE P:351 , SER P:500 , HOH P:1032 , HOH P:1073 , HOH P:1322 , HOH S:1894
binding site for residue EDO P 811
12
AD3
SOFTWARE
SER P:613 , LEU P:616 , LEU P:648 , HOH P:1788 , ASN R:157
binding site for residue PGE P 812
13
AD4
SOFTWARE
ARG P:121 , ALA P:173 , PHE P:382 , GLU P:387 , HOH P:925 , HOH P:938 , HOH P:1325 , HOH P:1361 , HOH R:957
binding site for residue GOL P 813
14
AD5
SOFTWARE
ASP P:305 , LYS P:309 , TYR P:683 , LYS P:690 , ALA P:753 , HOH P:919 , HOH P:950 , ARG S:313 , ASP S:680 , TYR S:683 , HOH S:934 , HOH S:1356
binding site for residue PEG P 814
15
AD6
SOFTWARE
PHE P:349 , LEU P:364 , ASN P:580 , HOH P:933 , HOH P:1028 , HOH P:1273 , GLY S:581 , LEU S:582 , HOH S:1915
binding site for residue PEG P 815
16
AD7
SOFTWARE
LYS P:142 , ASP P:146 , LEU P:340 , GLN P:368 , VAL P:370 , HOH P:993 , HOH P:1220 , HOH P:1523
binding site for residue PEG P 816
17
AD8
SOFTWARE
ARG P:264 , LEU P:302 , GLU P:306 , PHE P:317 , ARG P:601 , LEU P:660 , THR P:661 , VAL P:662 , ASP P:663 , LYS P:693 , HIS P:739 , ARG P:740 , HOH P:1069
binding site for residue PEG P 817
18
AD9
SOFTWARE
ARG P:72 , LYS P:73 , GLY P:74 , TYR P:78 , HOH P:914 , HOH P:1646 , HIS R:441
binding site for residue SO4 P 818
19
AE1
SOFTWARE
ARG Q:125 , ILE Q:126 , VAL Q:127 , HIS Q:128 , ARG Q:165 , GLY Q:184 , VAL Q:199 , GLY Q:200 , ASN Q:201 , PHE Q:214 , ILE Q:274 , HIS Q:275 , PHE Q:391 , LEU Q:407 , ARG Q:411 , SER Q:414 , TYR Q:415 , THR Q:418 , GLN Q:419 , GOL Q:802 , HOH Q:1004 , HOH Q:1123
binding site for residue HDD Q 801
20
AE2
SOFTWARE
VAL Q:127 , HIS Q:128 , VAL Q:169 , ASN Q:201 , PHE Q:206 , PHE Q:214 , HDD Q:801
binding site for residue GOL Q 802
21
AE3
SOFTWARE
GLU Q:224 , ASP Q:237 , ARG Q:536 , PEG Q:822 , HOH Q:904 , HOH Q:1118 , HOH R:1132 , HOH R:1589
binding site for residue EDO Q 803
22
AE4
SOFTWARE
GLY Q:98 , ASP Q:99 , HOH Q:1132 , GLY R:491 , ASN R:492 , HOH R:1376
binding site for residue EDO Q 804
23
AE5
SOFTWARE
ARG Q:61 , ASN Q:66 , HOH Q:1042 , HOH Q:1399
binding site for residue EDO Q 805
24
AE6
SOFTWARE
GLU Q:69 , HOH Q:946
binding site for residue EDO Q 806
25
AE7
SOFTWARE
ARG Q:542 , HOH Q:1066 , HIS R:12 , GLN R:13 , GLU R:32
binding site for residue EDO Q 807
26
AE8
SOFTWARE
VAL Q:179 , GLN Q:231 , TRP Q:304 , THR Q:311 , HOH Q:1034 , HOH Q:1315 , GLY R:312 , HOH R:1035 , HOH R:1268
binding site for residue EDO Q 808
27
AE9
SOFTWARE
LEU Q:620 , LYS Q:624 , VAL Q:628 , ALA Q:630 , HOH Q:935 , HOH Q:1054 , HOH Q:1639
binding site for residue EDO Q 809
28
AF1
SOFTWARE
ARG Q:471 , GLU Q:472 , THR Q:473 , HOH Q:965 , HOH Q:1238 , HOH Q:1616 , ALA S:79 , ARG S:87
binding site for residue EDO Q 810
29
AF2
SOFTWARE
GLN Q:139 , PRO Q:140 , TYR Q:141 , ASP Q:155 , ASN Q:157 , HOH Q:1878 , HOH Q:1972
binding site for residue EDO Q 811
30
AF3
SOFTWARE
ASP Q:578 , HOH Q:1023 , HOH Q:1198 , HOH Q:1389 , HOH Q:1414 , ASP R:350
binding site for residue EDO Q 812
31
AF4
SOFTWARE
SER Q:145 , ASN Q:281 , ALA Q:282 , SER Q:283 , GOL Q:821
binding site for residue EDO Q 813
32
AF5
SOFTWARE
HIS Q:441 , ARG S:72 , LYS S:73 , GLY S:74
binding site for residue EDO Q 814
33
AF6
SOFTWARE
ARG Q:37 , ALA Q:39 , HOH Q:964 , HOH Q:1255
binding site for residue EDO Q 815
34
AF7
SOFTWARE
SER Q:35 , ALA Q:47 , GLN Q:48 , PRO Q:49 , HOH Q:911 , HOH Q:976 , HOH Q:1236 , VAL R:535 , HOH R:978
binding site for residue EDO Q 816
35
AF8
SOFTWARE
PHE Q:347
binding site for residue EDO Q 817
36
AF9
SOFTWARE
THR Q:707 , HOH Q:1049 , HOH Q:1464
binding site for residue EDO Q 818
37
AG1
SOFTWARE
LYS Q:626 , ASP Q:730 , LEU Q:733 , THR Q:734
binding site for residue EDO Q 819
38
AG2
SOFTWARE
THR Q:574 , PRO Q:575 , PRO Q:577 , HOH Q:1015 , HOH Q:1488 , HOH Q:1605
binding site for residue GOL Q 820
39
AG3
SOFTWARE
ALA Q:282 , PRO Q:477 , EDO Q:813 , HOH Q:1254
binding site for residue GOL Q 821
40
AG4
SOFTWARE
ILE Q:229 , GLN Q:233 , ALA Q:235 , HIS Q:236 , EDO Q:803 , HOH Q:904 , HOH Q:1118 , HOH Q:1392 , HOH Q:1769 , ARG R:320 , HOH R:1137
binding site for residue PEG Q 822
41
AG5
SOFTWARE
ASN Q:77 , TYR Q:78 , ALA Q:79 , ARG Q:87 , HOH Q:1499
binding site for residue PEG Q 823
42
AG6
SOFTWARE
LYS Q:299 , GLU Q:362 , SER Q:587 , ILE Q:593 , ASP Q:595 , HOH Q:931 , HOH Q:1110 , HOH Q:1381
binding site for residue PEG Q 824
43
AG7
SOFTWARE
LYS Q:142 , GLN Q:368 , ARG Q:369 , HOH Q:923 , HOH Q:1446
binding site for residue PEG Q 825
44
AG8
SOFTWARE
ARG R:125 , ILE R:126 , VAL R:127 , HIS R:128 , ARG R:165 , GLY R:184 , VAL R:199 , GLY R:200 , ASN R:201 , PHE R:214 , ILE R:274 , HIS R:275 , PHE R:391 , LEU R:407 , ARG R:411 , SER R:414 , TYR R:415 , THR R:418 , GLN R:419 , GOL R:802 , HOH R:972 , HOH R:1136 , HOH R:1203
binding site for residue HDD R 801
45
AG9
SOFTWARE
VAL R:127 , HIS R:128 , VAL R:169 , ASN R:201 , PHE R:206 , PHE R:214 , HDD R:801 , HOH R:1052
binding site for residue GOL R 802
46
AH1
SOFTWARE
ARG R:521 , ILE R:745 , PRO R:746 , ILE R:748 , ASP R:749 , PGE R:807 , HOH R:1112
binding site for residue EDO R 803
47
AH2
SOFTWARE
HOH R:936 , HOH R:1023 , HOH R:1389
binding site for residue EDO R 804
48
AH3
SOFTWARE
GLY Q:312 , VAL R:179 , GLN R:231 , THR R:311 , HOH R:906 , HOH R:1188 , HOH R:1196
binding site for residue EDO R 805
49
AH4
SOFTWARE
SER R:613 , ALA R:614 , LEU R:617 , ASP R:644
binding site for residue EDO R 806
50
AH5
SOFTWARE
VAL R:303 , ASP R:305 , ARG R:521 , HIS R:522 , LYS R:690 , LEU R:692 , ILE R:745 , ILE R:748 , EDO R:803 , HOH R:919 , HOH R:935 , HOH R:1193 , HOH R:1265 , HOH R:1686
binding site for residue PGE R 807
51
AH6
SOFTWARE
LYS R:149 , ALA R:282 , PRO R:475 , GLY R:476 , PRO R:477 , GLU R:483 , GLN R:486 , HOH R:1093 , HOH R:1332 , HOH R:1594
binding site for residue PGE R 808
52
AH7
SOFTWARE
LYS Q:583 , PHE R:347 , PHE R:349 , PHE R:351 , ASP R:352 , SER R:500 , HOH R:925 , HOH R:1067 , HOH R:1149 , HOH R:1320 , HOH R:1569
binding site for residue GOL R 809
53
AH8
SOFTWARE
HOH P:1257 , GLY Q:491 , ASN Q:492 , GLU Q:496 , HOH Q:1374 , GLY R:98 , ASP R:99 , HOH R:915 , HOH R:977
binding site for residue GOL R 810
54
AH9
SOFTWARE
GLU R:63 , HOH R:922 , HOH R:1058 , HOH R:1808 , HOH R:1871 , HOH R:1884 , HOH R:1961
binding site for residue MG R 811
55
AI1
SOFTWARE
ASP P:644 , GLY P:645 , THR P:646 , SER R:143 , SER R:145 , SER R:154 , LYS R:478 , HOH R:938 , HOH R:1363
binding site for residue PG4 R 812
56
AI2
SOFTWARE
ARG S:125 , ILE S:126 , VAL S:127 , HIS S:128 , ARG S:165 , GLY S:184 , VAL S:199 , GLY S:200 , ASN S:201 , PHE S:214 , ILE S:274 , HIS S:275 , PHE S:391 , LEU S:407 , ARG S:411 , SER S:414 , TYR S:415 , THR S:418 , GLN S:419 , GOL S:802 , HOH S:1021 , HOH S:1160 , HOH S:1181
binding site for residue HDD S 801
57
AI3
SOFTWARE
VAL S:127 , HIS S:128 , VAL S:169 , ASN S:201 , PHE S:206 , PHE S:214 , HDD S:801
binding site for residue GOL S 802
58
AI4
SOFTWARE
ALA Q:79 , ARG Q:87 , ARG S:471 , GLU S:472 , THR S:473 , HOH S:964
binding site for residue EDO S 803
59
AI5
SOFTWARE
VAL S:303 , ASP S:305 , LYS S:690 , HIS S:691 , ILE S:748 , EDO S:805 , HOH S:994 , HOH S:1255
binding site for residue EDO S 804
60
AI6
SOFTWARE
ARG S:521 , HIS S:522 , ILE S:745 , ILE S:748 , EDO S:804 , HOH S:910 , HOH S:1038 , HOH S:1255 , HOH S:1661
binding site for residue EDO S 805
61
AI7
SOFTWARE
ALA S:630 , HOH S:1482 , HOH S:1615
binding site for residue EDO S 806
62
AI8
SOFTWARE
TYR S:485 , GLN S:486 , HOH S:1192 , HOH S:1669
binding site for residue EDO S 807
63
AI9
SOFTWARE
VAL Q:71 , LYS Q:73 , GLU S:430 , ARG S:435 , TYR S:440 , MET S:451 , HOH S:947 , HOH S:1289
binding site for residue EDO S 808
64
AJ1
SOFTWARE
ASN S:8 , PRO S:9 , HIS S:10 , GLN S:11 , HIS S:12
binding site for residue EDO S 809
65
AJ2
SOFTWARE
PRO P:537 , SER S:35 , ALA S:47 , PRO S:49 , HOH S:1581
binding site for residue EDO S 810
66
AJ3
SOFTWARE
PRO S:517 , HOH S:1022
binding site for residue EDO S 811
67
AJ4
SOFTWARE
ASP S:609 , TYR S:634 , ARG S:636 , HOH S:922 , HOH S:1040
binding site for residue GOL S 812
68
AJ5
SOFTWARE
GLY P:491 , ASN P:492 , GLU P:496 , HOH P:1378 , GLY S:98 , ASP S:99 , HOH S:911 , HOH S:938 , HOH S:954 , HOH S:1891
binding site for residue GOL S 813
69
AJ6
SOFTWARE
ARG P:542 , HIS S:12 , PRO S:31 , GLU S:32 , HOH S:926 , HOH S:1140 , HOH S:1214 , HOH S:1311
binding site for residue SO4 S 814
70
AJ7
SOFTWARE
HOH S:1448 , HOH S:1725 , HOH S:1732 , HOH S:1973 , HOH S:2101 , HOH S:2108
binding site for residue MG S 815
71
AJ8
SOFTWARE
ARG P:320 , HOH P:1291 , TRP S:227 , ILE S:229 , PRO S:230 , GLN S:233 , ALA S:235 , HIS S:236 , HOH S:907 , HOH S:1019 , HOH S:1110 , HOH S:1507 , HOH S:1735
binding site for residue PEG S 816
72
AJ9
SOFTWARE
LYS S:149 , ALA S:282 , PRO S:475 , GLY S:476 , PRO S:477 , GLU S:483 , HOH S:997 , HOH S:1350 , HOH S:1768
binding site for residue PEG S 817
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Select:
Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Select:
Label:
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain P
Chain Q
Chain R
Chain S
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (2.1 MB)
Header - Asym.Unit
Biol.Unit 1 (2.1 MB)
Header - Biol.Unit 1
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