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5B72
Asym. Unit
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Asym.Unit (114 KB)
Biol.Unit 1 (107 KB)
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Title
:
CRYSTAL STRUCTURE OF BOVINE LACTOPEROXIDASE WITH A BROKEN COVALENT BOND BETWEEN GLU258 AND HEME MOIETY AT 1.98 A RESOLUTION.
Authors
:
P. K. Singh, H. V. Sirohi, P. Kaur, S. Sharma, T. P. Singh
Date
:
03 Jun 16 (Deposition) - 13 Jul 16 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. K. Singh, H. V. Sirohi, N. Iqbal, P. Tiwari, P. Kaur, S. Sharma, T. P. Singh
Structure Of Bovine Lactoperoxidase With A Partially Linked Heme Moiety At 1. 98 Angstrom Resolution
Biochim. Biophys. Acta V. 1865 329 2016
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Hetero Components
(8, 21)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3a: IODIDE ION (IODa)
3b: IODIDE ION (IODb)
3c: IODIDE ION (IODc)
3d: IODIDE ION (IODd)
3e: IODIDE ION (IODe)
3f: IODIDE ION (IODf)
3g: IODIDE ION (IODg)
3h: IODIDE ION (IODh)
3i: IODIDE ION (IODi)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5a: 1-(OXIDOSULFANYL)METHANAMINE (OSMa)
6a: TRIETHYLENE GLYCOL (PGEa)
6b: TRIETHYLENE GLYCOL (PGEb)
7a: PHOSPHOSERINE (SEPa)
8a: SULFATE ION (SO4a)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
IOD
9
Ligand/Ion
IODIDE ION
4
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
OSM
1
Ligand/Ion
1-(OXIDOSULFANYL)METHANAMINE
6
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
7
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
8
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:95 , ARG A:96 , ARG A:506 , NAG A:808 , HOH A:1050
binding site for residue SO4 A 801
02
AC2
SOFTWARE
ILE A:24 , THR A:25 , PGE A:806
binding site for residue OSM A 802
03
AC3
SOFTWARE
TRP A:46 , VAL A:342
binding site for residue IOD A 803
04
AC4
SOFTWARE
ARG A:453 , IOD A:805
binding site for residue IOD A 804
05
AC5
SOFTWARE
SER A:459 , IOD A:804
binding site for residue IOD A 805
06
AC6
SOFTWARE
PRO A:197 , SER A:201 , LYS A:472 , PRO A:500 , MET A:501 , OSM A:802 , HOH A:993
binding site for residue PGE A 806
07
AC7
SOFTWARE
SER A:459 , GLN A:460 , VAL A:470
binding site for residue PGE A 807
08
AC8
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
binding site for residue CA A 813
09
AC9
SOFTWARE
ASN A:80
binding site for residue IOD A 814
10
AD1
SOFTWARE
ARG A:397
binding site for residue IOD A 816
11
AD2
SOFTWARE
LYS A:462 , THR A:463
binding site for residue IOD A 817
12
AD3
SOFTWARE
SER A:359
binding site for residue IOD A 818
13
AD4
SOFTWARE
GLU A:196 , SEP A:198 , GLN A:468
binding site for residue IOD A 819
14
AD5
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , ALA A:114 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , PHE A:380 , ILE A:436 , ARG A:440 , HOH A:909 , HOH A:922 , HOH A:948 , HOH A:952
binding site for residue HEM A 820
15
AD6
SOFTWARE
ASN A:95 , ARG A:96 , PRO A:209 , ILE A:315 , SO4 A:801
binding site for Mono-Saccharide NAG A 808 bound to ASN A 95
16
AD7
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , HOH A:994 , HOH A:996 , HOH A:1091
binding site for Mono-Saccharide NAG A 809 bound to ASN A 205
17
AD8
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , HOH A:968
binding site for Poly-Saccharide residues NAG A 810 through NAG A 811 bound to ASN A 241
18
AD9
SOFTWARE
ASN A:332 , HOH A:928
binding site for Mono-Saccharide NAG A 812 bound to ASN A 332
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (114 KB)
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