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5B6Z
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (319 KB)
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(1)
Title
:
A THREE DIMENSIONAL MOVIE OF STRUCTURAL CHANGES IN BACTERIORHODOPSIN: STRUCTURE OBTAINED 1.725 MS US AFTER PHOTOEXCITATION
Authors
:
A. Royant, E. Nango, T. Nakane, T. Tanaka, T. Arima, R. Neutze, S. Iwata
Date
:
02 Jun 16 (Deposition) - 21 Dec 16 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Bacteriorhodopsin, Xfel, Time- Resolved Serial Femtosecond Crystallography, Sacla, Proton Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Nango, A. Royant, M. Kubo, T. Nakane, C. Wickstrand, T. Kimura, T. Tanaka, K. Tono, C. Song, R. Tanaka, T. Arima, A. Yamashita, J. Kobayashi, T. Hosaka, E. Mizohata, P. Nogly, M. Sugahara, D. Nam, T. Nomura, T. Shimamura, D. Im, T. Fujiwara, Y. Yamanaka, B. Jeon, T. Nishizawa, K. Oda, M. Fukuda, R. Andersson, P. Bath, R. Dods, J. Davidsson, S. Matsuoka, S. Kawatake, M. Murata, O. Nureki, S. Owada T. Kameshima, T. Hatsui, Y. Joti, G. Schertler, M. Yabashi, A. N. Bondar, J. Standfuss, R. Neutze, S. Iwata
A Three-Dimensional Movie Of Structural Changes In Bacteriorhodopsin
Science V. 354 1552 2016
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Hetero Components
(10, 16)
Info
All Hetero Components
01a: TETRADECANE (C14a)
02a: DECANE (D10a)
03a: NONANE (DD9a)
04a: HEPTANE (HP6a)
05a: 2,3-DI-PHYTANYL-GLYCEROL (L2Pa)
05b: 2,3-DI-PHYTANYL-GLYCEROL (L2Pb)
05c: 2,3-DI-PHYTANYL-GLYCEROL (L2Pc)
06a: PENTADECANE (MYSa)
06b: PENTADECANE (MYSb)
07a: N-OCTANE (OCTa)
07b: N-OCTANE (OCTb)
07c: N-OCTANE (OCTc)
08a: RETINAL (RETa)
09a: TRIDECANE (TRDa)
10a: UNDECANE (UNDa)
10b: UNDECANE (UNDb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
C14
1
Ligand/Ion
TETRADECANE
2
D10
1
Ligand/Ion
DECANE
3
DD9
1
Ligand/Ion
NONANE
4
HP6
1
Ligand/Ion
HEPTANE
5
L2P
3
Ligand/Ion
2,3-DI-PHYTANYL-GLYCEROL
6
MYS
2
Ligand/Ion
PENTADECANE
7
OCT
3
Ligand/Ion
N-OCTANE
8
RET
1
Ligand/Ion
RETINAL
9
TRD
1
Ligand/Ion
TRIDECANE
10
UND
2
Ligand/Ion
UNDECANE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:86 , THR A:89 , THR A:90 , LEU A:93 , MET A:118 , TRP A:138 , SER A:141 , THR A:142 , MET A:145 , TRP A:182 , TYR A:185 , PRO A:186 , ASP A:212 , LYS A:216
binding site for residue RET A 300
02
AC2
SOFTWARE
ALA A:44 , LEU A:48 , PHE A:54 , THR A:107 , TYR A:147 , D10 A:602
binding site for residue L2P A 600
03
AC3
SOFTWARE
LEU A:149 , SER A:183
binding site for residue TRD A 601
04
AC4
SOFTWARE
LEU A:22 , L2P A:600 , HP6 A:603
binding site for residue D10 A 602
05
AC5
SOFTWARE
D10 A:602
binding site for residue HP6 A 603
06
AC6
SOFTWARE
LYS A:172
binding site for residue OCT A 604
07
AC7
SOFTWARE
MYS A:606
binding site for residue OCT A 605
08
AC8
SOFTWARE
ILE A:191 , OCT A:605 , L2P A:608
binding site for residue MYS A 606
09
AC9
SOFTWARE
L2P A:608
binding site for residue UND A 607
10
AD1
SOFTWARE
TYR A:131 , TRP A:138 , ILE A:203 , MYS A:606 , UND A:607
binding site for residue L2P A 608
11
AD2
SOFTWARE
ILE A:52 , MET A:56 , TYR A:64 , TRP A:80 , ALA A:84 , GLY A:116 , ILE A:117 , GLY A:120 , LEU A:123 , VAL A:124 , C14 A:612
binding site for residue L2P A 609
12
AD3
SOFTWARE
TYR A:26
binding site for residue MYS A 610
13
AD4
SOFTWARE
ARG A:225
binding site for residue DD9 A 611
14
AD5
SOFTWARE
LEU A:87 , PRO A:91 , LEU A:95 , L2P A:609
binding site for residue C14 A 612
15
AD6
SOFTWARE
TYR A:26
binding site for residue OCT A 613
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (117 KB)
Header - Asym.Unit
Biol.Unit 1 (319 KB)
Header - Biol.Unit 1
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