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5B25
Biol. Unit 1
Info
Asym.Unit (472 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (119 KB)
Biol.Unit 3 (120 KB)
Biol.Unit 4 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PDE1B WITH INHIBITOR 3
Authors
:
K. Ida, W. Lane, G. Snell, S. Sogabe
Date
:
07 Jan 16 (Deposition) - 03 Feb 16 (Release) - 24 Feb 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Inhibitor, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Li, H. Zheng, J. Zhao, L. Zhang, W. Yao, H. Zhu, J. D. Beard, K. Ida, W. Lane, G. Snell, S. Sogabe, C. J. Heyser, G. L. Snyder, J. P. Hendrick, K. E. Vanover, R. E. Davis, L. P. Wennogle
Discovery Of Potent And Selective Inhibitors Of Phosphodiesterase 1 For The Treatment Of Cognitive Impairment Associated With Neurodegenerative And Neuropsychiatric Diseases
J. Med. Chem. V. 59 1149 2016
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: (11R,15S)-4-{[4-(6-FLUOROPYRIDIN-2... (4QJa)
1b: (11R,15S)-4-{[4-(6-FLUOROPYRIDIN-2... (4QJb)
1c: (11R,15S)-4-{[4-(6-FLUOROPYRIDIN-2... (4QJc)
1d: (11R,15S)-4-{[4-(6-FLUOROPYRIDIN-2... (4QJd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
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Label:
No.
Name
Count
Type
Full Name
1
4QJ
1
Ligand/Ion
(11R,15S)-4-{[4-(6-FLUOROPYRIDIN-2-YL)PHENYL]METHYL}-8-METHYL-5-(PHENYLAMINO)-1,3,4,8,10-PENTAAZATETRACYCLO[7.6.0.02,6.011,15]PENTADECA-2,5,9-TRIEN-7-ONE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AD1 (SOFTWARE)
09: AD2 (SOFTWARE)
10: AD4 (SOFTWARE)
11: AD5 (SOFTWARE)
12: AE1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:227 , HIS A:263 , ASP A:264 , ASP A:370 , HOH A:733 , HOH A:739
binding site for residue ZN A 601
02
AC2
SOFTWARE
ASP A:264 , HOH A:713 , HOH A:733 , HOH A:748 , HOH A:768 , HOH A:865
binding site for residue MG A 602
03
AC3
SOFTWARE
ILE A:371 , HIS A:373 , LEU A:388 , PHE A:392 , LEU A:409 , VAL A:417 , SER A:420 , GLN A:421 , GLY A:423 , PHE A:424 , PHE A:427 , GOL A:607 , HOH A:712 , HOH A:734 , GLU C:441 , PRO C:474 , ASN C:475 , VAL C:478 , VAL C:479
binding site for residue 4QJ A 603
04
AC4
SOFTWARE
LYS A:344 , LYS A:347 , HOH A:811 , HOH A:832 , HOH A:847 , HOH A:848 , GLN C:351
binding site for residue SO4 A 604
05
AC5
SOFTWARE
ARG A:499 , HOH A:772 , PRO C:221 , ARG C:394 , HOH C:772
binding site for residue SO4 A 605
06
AC6
SOFTWARE
ARG A:196 , LYS A:198 , ASN A:314 , GLU A:319 , HOH A:737 , LYS B:198
binding site for residue GOL A 606
07
AC7
SOFTWARE
THR A:271 , GLN A:395 , SER A:407 , PRO A:408 , CYS A:410 , 4QJ A:603 , HOH A:706 , HOH A:712 , HOH A:725 , PRO C:476
binding site for residue GOL A 607
08
AD1
SOFTWARE
GLU A:441 , PRO A:474 , ASN A:475 , PRO A:476 , VAL A:478 , VAL A:479 , TYR B:222 , ILE B:371 , HIS B:373 , LEU B:388 , PHE B:392 , LEU B:409 , VAL B:417 , SER B:420 , GLN B:421 , GLY B:423 , PHE B:424 , PHE B:427 , GOL B:607 , HOH B:722 , HOH B:723
binding site for residue 4QJ B 603
09
AD2
SOFTWARE
GLN A:351 , LYS B:344 , LYS B:347 , HOH B:785 , HOH B:797
binding site for residue SO4 B 604
10
AD4
SOFTWARE
LYS A:198 , ARG B:196 , ASN B:314 , GLU B:319
binding site for residue GOL B 606
11
AD5
SOFTWARE
LEU A:447 , PRO A:476 , THR B:271 , SER B:407 , PRO B:408 , CYS B:410 , 4QJ B:603 , HOH B:722
binding site for residue GOL B 607
12
AE1
SOFTWARE
THR A:316 , ASP A:318 , ARG C:196 , SER C:249 , GLU C:250 , HOH C:707 , HOH C:731 , HOH C:778 , HOH C:826 , HOH C:841
binding site for residue SO4 C 604
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Chain A
Asymmetric Unit 1
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Asym.Unit (472 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (119 KB)
Header - Biol.Unit 2
Biol.Unit 3 (120 KB)
Header - Biol.Unit 3
Biol.Unit 4 (120 KB)
Header - Biol.Unit 4
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