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5B1H
Biol. Unit 1
Info
Asym.Unit (204 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (101 KB)
Biol.Unit 3 (101 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYSTATHIONINE BETA-SYNTHASE FROM LACTOBACILLUS PLANTARUM
Authors
:
Y. Matoba, M. Sugiyama
Date
:
04 Dec 15 (Deposition) - 07 Dec 16 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Biol. Unit 3: D (2x)
Keywords
:
Enzyme, Plp, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Matoba, T. Yoshida, H. Izuhara-Kihara, M. Noda, M. Sugiyama
Crystallographic And Mutational Analyses Of Cystathionine Beta-Synthase In The H2 S-Synthetic Gene Cluster In Lactobacillus Plantarum
Protein Sci. V. 26 763 2017
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
2a: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPa)
2b: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPb)
2c: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPc)
2d: (2S)-2-AMINO-6-[[3-HYDROXY-2-METHY... (LLPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
LLP
2
Mod. Amino Acid
(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AD2 (SOFTWARE)
10: AD4 (SOFTWARE)
11: AD6 (SOFTWARE)
12: AD7 (SOFTWARE)
13: AD8 (SOFTWARE)
14: AD9 (SOFTWARE)
15: AE1 (SOFTWARE)
16: AE2 (SOFTWARE)
17: AE3 (SOFTWARE)
18: AE6 (SOFTWARE)
19: AE7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:250 , HIS A:251 , ARG A:254
binding site for residue SO4 A 401
02
AC2
SOFTWARE
SER A:135 , ASN A:136 , SO4 A:403 , HOH A:529 , LYS D:62 , ASN D:136
binding site for residue SO4 A 402
03
AC3
SOFTWARE
LYS A:62 , ASN A:136 , SO4 A:402 , HOH A:525 , HOH A:530 , SER D:135 , ASN D:136
binding site for residue SO4 A 403
04
AC4
SOFTWARE
THR A:69 , ALA A:70 , GLY A:71 , ASN A:72 , THR A:73 , GLN A:142 , HOH A:544 , HOH A:548
binding site for residue SO4 A 404
05
AC5
SOFTWARE
MET A:1 , MET C:1
binding site for residue GOL A 405
06
AC6
SOFTWARE
HIS A:5 , GLN A:7 , GLN A:82 , ALA A:83 , HIS B:25 , ASN B:281 , PRO C:19 , ASP C:255 , HIS C:256 , HOH C:505
binding site for residue GOL A 406
07
AC7
SOFTWARE
LEU A:54 , HIS A:84 , HOH A:531 , ASN B:24 , THR B:276
binding site for residue GOL A 407
08
AC8
SOFTWARE
THR A:169 , ALA A:280 , ASN A:281 , SER A:282
binding site for residue GOL A 408
09
AD2
SOFTWARE
HIS A:85 , ILE B:20 , GLU B:21 , VAL B:22 , HIS B:25 , HOH B:514
binding site for residue GOL B 403
10
AD4
SOFTWARE
HIS B:85 , ARG B:254 , HOH B:561 , ALA C:132
binding site for residue GOL B 405
11
AD6
SOFTWARE
ARG C:250 , HIS C:251 , ARG C:254
binding site for residue SO4 C 401
12
AD7
SOFTWARE
THR C:69 , ALA C:70 , GLY C:71 , ASN C:72 , THR C:73 , GLN C:142 , HOH C:535 , HOH C:541
binding site for residue SO4 C 402
13
AD8
SOFTWARE
SER B:135 , ASN B:136 , LYS C:62 , ASN C:136 , SO4 C:404 , HOH C:526 , HOH C:539
binding site for residue SO4 C 403
14
AD9
SOFTWARE
LYS B:62 , ASN B:136 , SER C:135 , ASN C:136 , SO4 C:403 , HOH C:536
binding site for residue SO4 C 404
15
AE1
SOFTWARE
HIS C:154 , THR C:155 , GLU C:159 , HOH C:530
binding site for residue GOL C 405
16
AE2
SOFTWARE
LEU C:54 , ALA C:61 , HIS C:84 , HOH C:556 , ASN D:24 , THR D:276
binding site for residue GOL C 406
17
AE3
SOFTWARE
THR C:169 , ALA C:280 , ASN C:281 , SER C:282
binding site for residue GOL C 407
18
AE6
SOFTWARE
HIS C:85 , ILE D:20 , GLU D:21 , VAL D:22 , HIS D:25 , HOH D:512
binding site for residue GOL D 403
19
AE7
SOFTWARE
PRO A:165 , HIS A:283 , LEU D:2 , GLN D:4 , GLU D:8
binding site for residue GOL D 404
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Asymmetric Unit 1
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Asym.Unit (204 KB)
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