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5B0S
Asym. Unit
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Asym.Unit (131 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
BETA-1,2-MANNOBIOSE PHOSPHORYLASE FROM LISTERIA INNOCUA - BETA-1,2-MANNOTRIOSE COMPLEX
Authors
:
T. Tsuda, T. Arakawa, S. Fushinobu
Date
:
02 Nov 15 (Deposition) - 02 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glycoside Phosphorylase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tsuda, T. Nihira, K. Chiku, E. Suzuki, T. Arakawa, M. Nishimoto, M. Kitaoka, H. Nakai, S. Fushinobu
Characterization And Crystal Structure Determination Of Beta-1, 2-Mannobiose Phosphorylase From Listeria Innocua
Febs Lett. V. 589 3816 2015
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
4c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
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Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
GOL
2
Ligand/Ion
GLYCEROL
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
MES
3
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
SO4
9
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:188 , ASP A:189 , ARG A:206 , HIS A:265 , TYR A:273 , BMA A:401 , MAN A:403
binding site for residue SO4 A 404
02
AC2
SOFTWARE
ILE A:147 , GLY A:148 , ASP A:149 , THR A:150 , LYS A:171
binding site for residue SO4 A 405
03
AC3
SOFTWARE
ASP A:302 , TYR B:4
binding site for residue SO4 A 406
04
AC4
SOFTWARE
VAL A:17 , LYS A:18 , ARG A:110 , HOH A:582
binding site for residue SO4 A 407
05
AC5
SOFTWARE
GLN A:179 , ARG A:226
binding site for residue SO4 A 408
06
AC6
SOFTWARE
ILE A:20 , HIS A:21 , GLU A:22 , HOH A:573
binding site for residue MES A 409
07
AC7
SOFTWARE
VAL B:17 , LYS B:18 , ARG B:110
binding site for residue SO4 B 401
08
AC8
SOFTWARE
LYS B:188 , ASP B:189 , ARG B:206 , HIS B:265 , TYR B:273 , BMA B:409 , MAN B:411
binding site for residue SO4 B 402
09
AC9
SOFTWARE
GLU B:177 , GLN B:179 , ARG B:226
binding site for residue SO4 B 403
10
AD1
SOFTWARE
ARG B:92
binding site for residue SO4 B 404
11
AD2
SOFTWARE
LEU B:235 , GLY B:236 , ARG B:291
binding site for residue GOL B 405
12
AD3
SOFTWARE
TYR A:178 , GLY A:180 , HOH A:619 , ASP B:230 , ARG B:232
binding site for residue GOL B 406
13
AD4
SOFTWARE
ILE B:147 , GLY B:148 , ASP B:149 , THR B:150 , LYS B:171 , TYR B:201 , HOH B:529
binding site for residue MES B 407
14
AD5
SOFTWARE
ILE B:20 , HIS B:21 , GLU B:22 , TYR B:129
binding site for residue MES B 408
15
AD6
SOFTWARE
ASN A:31 , ARG A:46 , ARG A:89 , MET A:90 , LEU A:103 , GLU A:140 , ASP A:141 , LYS A:188 , ARG A:246 , ASN A:271 , TYR A:273 , PHE A:309 , PHE A:314 , ASP A:333 , SO4 A:404 , HOH A:595 , HOH A:616
binding site for Poly-Saccharide residues BMA A 401 through MAN A 403
16
AD7
SOFTWARE
ILE A:20 , HIS A:21 , GLU A:22 , ARG A:46 , ARG A:89 , MET A:90 , LEU A:103 , GLU A:140 , LYS A:188 , ARG A:246 , ASN A:271 , TYR A:273 , BMA A:401 , SO4 A:404 , HOH A:573 , HOH A:595 , HOH A:616 , ASN B:31 , ARG B:46 , ARG B:89 , MET B:90 , LEU B:103 , GLU B:140 , ASP B:141 , GLU B:177 , GLN B:179 , LYS B:188 , ASP B:189 , ARG B:206 , LEU B:215 , ARG B:226 , ARG B:246 , HIS B:265 , ASN B:271 , TYR B:273 , PHE B:309 , ASP B:333 , HOH B:526 , HOH B:550
binding site for Poly-Saccharide residues BMA B 409 through MAN B 411
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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