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5AWV
Asym. Unit
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Asym.Unit (385 KB)
Biol.Unit 1 (368 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCOPEPTIDE HEXOSE OXIDASE DBV29 COMPLEXED WITH TEICOPLANIN
Authors
:
Y. C. Liu, T. L. Li
Date
:
09 Jul 15 (Deposition) - 19 Aug 15 (Release) - 19 Aug 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,I,J,K,L,M,N,O,P (1x)
Keywords
:
Oxidoreductase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. C. Liu, Y. S. Li, S. Y. Lyu, L. J. Hsu, Y. H. Chen, Y. T. Huang, H. C. Chan, C. J. Huang, G. H. Chen, C. C. Chou, M. D. Tsai, T. L. Li
Interception Of Teicoplanin Oxidation Intermediates Yields New Antimicrobial Scaffolds.
Nat. Chem. Biol. V. 7 304 2011
[
close entry info
]
Hetero Components
(10, 93)
Info
All Hetero Components
01a: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGa)
01b: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGb)
01c: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGc)
01d: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGd)
01e: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGe)
01f: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGf)
01g: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGg)
01h: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGh)
01i: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGi)
01j: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGj)
01k: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGk)
01l: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGl)
01m: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGm)
01n: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGn)
01o: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGo)
01p: (2S)-AMINO(3,5-DIHYDROXYPHENYL)ETH... (3FGp)
02a: 3-CHLORO-D-TYROSINE (3MYa)
02b: 3-CHLORO-D-TYROSINE (3MYb)
02c: 3-CHLORO-D-TYROSINE (3MYc)
02d: 3-CHLORO-D-TYROSINE (3MYd)
02e: 3-CHLORO-D-TYROSINE (3MYe)
02f: 3-CHLORO-D-TYROSINE (3MYf)
02g: 3-CHLORO-D-TYROSINE (3MYg)
02h: 3-CHLORO-D-TYROSINE (3MYh)
03a: CITRIC ACID (CITa)
03b: CITRIC ACID (CITb)
03c: CITRIC ACID (CITc)
03d: CITRIC ACID (CITd)
03e: CITRIC ACID (CITe)
04a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
04b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
04c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
04d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
05a: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPa)
05b: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPb)
05c: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPc)
05d: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPd)
05e: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPe)
05f: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPf)
05g: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPg)
05h: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPh)
05i: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPi)
05j: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPj)
05k: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPk)
05l: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPl)
05m: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPm)
05n: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPn)
05o: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPo)
05p: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPp)
05q: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPq)
05r: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPr)
05s: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPs)
05t: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPt)
05u: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPu)
05v: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPv)
05w: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPw)
05x: (2R)-AMINO(4-HYDROXYPHENYL)ETHANOI... (GHPx)
06a: ALPHA-D-MANNOSE (MANa)
06b: ALPHA-D-MANNOSE (MANb)
06c: ALPHA-D-MANNOSE (MANc)
06d: ALPHA-D-MANNOSE (MANd)
06e: ALPHA-D-MANNOSE (MANe)
06f: ALPHA-D-MANNOSE (MANf)
06g: ALPHA-D-MANNOSE (MANg)
06h: ALPHA-D-MANNOSE (MANh)
07a: 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANU... (N1La)
07b: 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANU... (N1Lb)
07c: 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANU... (N1Lc)
07d: 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANU... (N1Ld)
07e: 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANU... (N1Le)
07f: 2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANU... (N1Lf)
08a: N-ACETYL-D-GLUCOSAMINE (NAGa)
08b: N-ACETYL-D-GLUCOSAMINE (NAGb)
08c: N-ACETYL-D-GLUCOSAMINE (NAGc)
08d: N-ACETYL-D-GLUCOSAMINE (NAGd)
08e: N-ACETYL-D-GLUCOSAMINE (NAGe)
08f: N-ACETYL-D-GLUCOSAMINE (NAGf)
08g: N-ACETYL-D-GLUCOSAMINE (NAGg)
08h: N-ACETYL-D-GLUCOSAMINE (NAGh)
09a: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYa)
09b: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYb)
09c: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYc)
09d: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYd)
09e: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYe)
09f: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYf)
09g: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYg)
09h: (BETAR)-3-CHLORO-BETA-HYDROXY-L-TY... (OMYh)
10a: 8-METHYLNONANOIC ACID (T55a)
10b: 8-METHYLNONANOIC ACID (T55b)
10c: 8-METHYLNONANOIC ACID (T55c)
10d: 8-METHYLNONANOIC ACID (T55d)
10e: 8-METHYLNONANOIC ACID (T55e)
10f: 8-METHYLNONANOIC ACID (T55f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3FG
16
OTHER
(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2
3MY
8
OTHER
3-CHLORO-D-TYROSINE
3
CIT
5
Ligand/Ion
CITRIC ACID
4
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
5
GHP
24
OTHER
(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
6
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
7
N1L
6
Ligand/Ion
2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANURONIC ACID
8
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
OMY
8
OTHER
(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
10
T55
6
Ligand/Ion
8-METHYLNONANOIC ACID
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:86 , ARG A:87 , SER A:88 , GLY A:89 , GLY A:90 , HIS A:91 , CYS A:92 , PHE A:93 , PHE A:96 , PRO A:127 , GLY A:149 , VAL A:150 , CYS A:151 , VAL A:154 , GLY A:155 , GLY A:157 , GLY A:158 , HIS A:159 , GLY A:164 , TYR A:165 , GLY A:218 , GLY A:219 , GLY A:222 , VAL A:224 , TYR A:470 , ASN A:472 , HOH A:779 , HOH A:820 , HOH A:838 , HOH A:847 , HOH A:962 , HOH A:1003 , 3MY K:2 , OMY K:6 , N1L K:104
binding site for residue FAD A 601
02
AC2
SOFTWARE
GLY A:81 , ARG A:83 , HIS A:514 , HIS A:516 , HOH A:717 , HOH A:877
binding site for residue CIT A 602
03
AC3
SOFTWARE
VAL B:86 , ARG B:87 , SER B:88 , GLY B:89 , GLY B:90 , HIS B:91 , CYS B:92 , PHE B:93 , PHE B:96 , VAL B:97 , PRO B:127 , GLY B:149 , VAL B:150 , CYS B:151 , VAL B:154 , GLY B:155 , GLY B:157 , GLY B:158 , HIS B:159 , GLY B:164 , TYR B:165 , GLY B:218 , GLY B:219 , GLY B:222 , VAL B:224 , TYR B:470 , ASN B:472 , HOH B:784 , HOH B:809 , HOH B:815 , HOH B:947 , HOH B:949 , HOH B:955 , 3MY L:2 , OMY L:6 , N1L L:103
binding site for residue FAD B 601
04
AC4
SOFTWARE
GLY B:81 , LYS B:82 , ARG B:83 , HIS B:514 , HIS B:516 , HOH B:705 , HOH B:720 , HOH B:724 , HOH B:838 , HOH B:872 , HOH B:896 , HOH B:951
binding site for residue CIT B 603
05
AC5
SOFTWARE
GLY C:81 , LYS C:82 , ARG C:83 , HIS C:514 , HIS C:516 , HOH C:719 , HOH C:780
binding site for residue CIT C 602
06
AC6
SOFTWARE
ASP A:480 , GLY A:482 , HOH A:709 , GLY D:81 , ARG D:83 , HIS D:514 , HIS D:516 , HOH D:701 , HOH D:712 , HOH D:714 , HOH D:737 , HOH D:774
binding site for residue CIT D 602
07
AC7
SOFTWARE
GHP O:1 , 3MY O:2 , 3FG O:3 , GHP O:4 , OMY O:6
binding site for residue CIT O 105
08
AC8
SOFTWARE
PRO B:58 , ASP B:59 , TYR B:60 , ARG B:83 , PHE B:93 , ASP B:101 , VAL B:102 , VAL B:104 , THR B:366 , ASP B:394 , TYR B:395 , ASN B:427 , ILE B:429 , GLY B:431 , TRP B:432 , TYR B:473 , FAD B:601 , HOH B:908 , 3MY L:2 , GHP L:4 , OMY L:6 , HOH L:201
binding site for residues T55 B 602 and N1L L 103
09
AC9
SOFTWARE
VAL C:86 , ARG C:87 , SER C:88 , GLY C:89 , GLY C:90 , HIS C:91 , CYS C:92 , PHE C:93 , PHE C:96 , VAL C:97 , PRO C:127 , GLY C:149 , VAL C:150 , GLY C:152 , GLY C:153 , VAL C:154 , GLY C:155 , GLY C:157 , GLY C:158 , HIS C:159 , GLY C:164 , TYR C:165 , GLY C:218 , GLY C:219 , GLY C:222 , VAL C:224 , TYR C:470 , ASN C:472 , HOH C:769 , HOH C:810 , HOH C:837 , HOH C:850 , HOH C:886 , HOH C:921 , 3MY M:2 , GHP M:4 , OMY M:6 , N1L M:104
binding site for Di-peptide FAD C 601 and CYS C 151
10
AD1
SOFTWARE
ALA C:50 , VAL C:86 , ARG C:87 , SER C:88 , GLY C:89 , GLY C:90 , CYS C:92 , PHE C:93 , PHE C:96 , VAL C:97 , PRO C:127 , GLY C:149 , VAL C:150 , CYS C:151 , GLY C:153 , VAL C:154 , GLY C:155 , GLY C:157 , GLY C:158 , HIS C:159 , GLY C:164 , TYR C:165 , GLY C:218 , GLY C:219 , GLY C:222 , VAL C:224 , TYR C:470 , ASN C:472 , HOH C:769 , HOH C:810 , HOH C:837 , HOH C:850 , HOH C:886 , HOH C:921 , 3MY M:2 , OMY M:6 , N1L M:104
binding site for Di-peptide FAD C 601 and HIS C 91
11
AD2
SOFTWARE
VAL D:86 , ARG D:87 , SER D:88 , GLY D:89 , GLY D:90 , HIS D:91 , CYS D:92 , PHE D:93 , PHE D:96 , PRO D:127 , GLY D:149 , VAL D:150 , GLY D:152 , GLY D:153 , VAL D:154 , GLY D:155 , GLY D:157 , GLY D:158 , HIS D:159 , GLY D:164 , TYR D:165 , GLY D:218 , GLY D:219 , GLY D:222 , VAL D:224 , TYR D:470 , ASN D:472 , HOH D:772 , HOH D:800 , HOH D:802 , HOH D:844 , HOH D:869
binding site for Di-peptide FAD D 601 and CYS D 151
12
AD3
SOFTWARE
ALA D:50 , VAL D:86 , ARG D:87 , SER D:88 , GLY D:89 , GLY D:90 , CYS D:92 , PHE D:93 , PHE D:96 , PRO D:127 , GLY D:149 , VAL D:150 , CYS D:151 , GLY D:153 , VAL D:154 , GLY D:155 , GLY D:157 , GLY D:158 , HIS D:159 , GLY D:164 , TYR D:165 , GLY D:218 , GLY D:219 , GLY D:222 , VAL D:224 , TYR D:470 , ASN D:472 , HOH D:772 , HOH D:800 , HOH D:802 , HOH D:844 , HOH D:869
binding site for Di-peptide FAD D 601 and HIS D 91
13
AD4
SOFTWARE
ARG B:202 , HIS B:207 , ASP B:208 , HIS B:389 , ALA B:413 , ARG B:501 , LYS B:504 , HOH I:201 , HOH I:202 , HOH I:203 , HOH I:204 , HOH I:205
binding site for teicoplanin chain I
14
AD5
SOFTWARE
SER C:268 , ARG C:269 , ARG C:272 , ASP C:335 , ARG C:374 , ASP C:377 , GLN C:381 , HOH C:734 , HOH J:201 , HOH J:202 , HOH J:203 , HOH J:204 , HOH J:205 , GHP N:5 , OMY N:6 , 3FG N:7 , NAG N:103
binding site for teicoplanin chain J
15
AD6
SOFTWARE
PHE A:93 , VAL A:150 , THR A:254 , GLN A:294 , MET A:304 , GLY A:305 , GLU A:306 , PRO A:312 , SER A:353 , ARG A:357 , GLY A:359 , ARG A:360 , THR A:366 , ASP A:394 , TYR A:395 , TRP A:399 , ASN A:427 , GLY A:431 , TYR A:473 , FAD A:601 , HOH K:201 , GHP L:5 , 3FG L:7 , MAN L:101
binding site for teicoplanin chain K
16
AD7
SOFTWARE
PRO B:58 , ASP B:59 , TYR B:60 , ARG B:83 , PHE B:93 , VAL B:97 , ASN B:99 , PRO B:100 , VAL B:104 , VAL B:150 , THR B:254 , GLN B:294 , GLY B:305 , GLU B:306 , PRO B:312 , SER B:353 , ARG B:357 , GLY B:358 , GLY B:359 , ARG B:360 , GLY B:361 , THR B:366 , ASP B:394 , TYR B:395 , TRP B:399 , ASN B:427 , ILE B:429 , GLY B:431 , TRP B:432 , TYR B:473 , FAD B:601 , HOH B:745 , HOH B:773 , HOH B:908 , 3FG K:7 , MAN K:102 , HOH L:201
binding site for teicoplanin chain L
17
AD8
SOFTWARE
PHE C:93 , VAL C:150 , CYS C:151 , THR C:254 , GLN C:294 , GLY C:303 , MET C:304 , GLY C:305 , GLU C:306 , PRO C:312 , SER C:353 , GLY C:356 , ARG C:357 , GLY C:358 , GLY C:359 , ARG C:360 , GLY C:361 , THR C:366 , ASP C:394 , TYR C:395 , TRP C:399 , ASN C:427 , GLY C:431 , TRP C:432 , TYR C:473 , FAD C:601 , HOH C:846
binding site for teicoplanin chain M
18
AD9
SOFTWARE
ASP A:203 , ALA A:265 , ARG A:272 , HOH A:723 , ARG C:272 , GLU C:276 , GLU C:279 , ARG C:280 , ARG C:374 , HOH C:793 , GHP J:1 , 3MY J:2 , HOH N:201 , HOH N:202 , HOH N:203 , HOH N:204 , HOH N:205 , HOH N:206 , HOH N:207 , HOH N:208 , HOH N:209 , GHP O:1 , 3MY O:2
binding site for teicoplanin chain N
19
AE1
SOFTWARE
ASP A:203 , PRO A:205 , HIS A:206 , GLU A:264 , ARG A:272 , ASP A:377 , ARG A:378 , GLN A:381 , GLU A:455 , HOH A:935 , HOH A:1057 , GHP N:1 , 3MY N:2 , 3FG N:3 , CIT O:105 , HOH O:201 , HOH O:202 , HOH O:203 , HOH O:204 , HOH O:205 , HOH O:206 , HOH O:207 , HOH O:208 , HOH O:209 , HOH O:210 , HOH O:211
binding site for teicoplanin chain O
20
AE2
SOFTWARE
PRO B:435 , GLY B:436 , GLU B:438 , ALA B:439 , LYS B:440 , THR B:443 , ARG B:446 , ASP B:480 , HOH B:779 , HOH B:996 , HOH P:201 , HOH P:202 , HOH P:203 , HOH P:204
binding site for teicoplanin chain P
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