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5AVR
Asym. Unit
Info
Asym.Unit (213 KB)
Biol.Unit 1 (207 KB)
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(1)
Title
:
KINETICS BY X-RAY CRYSTALLOGRAPHY: TL+-SUBSTITUTION OF BOUND K+ IN THE E2.MGF42-.2K+ CRYSTAL AFTER 1.5 MIN
Authors
:
H. Ogawa, F. Cornelius, A. Hirata, C. Toyoshima
Date
:
01 Jul 15 (Deposition) - 02 Sep 15 (Release) - 02 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,G
Biol. Unit 1: A,B,G (1x)
Keywords
:
Membrane Protein, Ion Pump, Atpase, K+ Binding, Haloacid Dehydrogenease Superfamily, Phosphate Analogue, Atp-Binding, Hydrolase, Ion Transport, Nucleotide-Binding, Phosphoprotein, Hydrolase-Transport Protein Complex, Kinetics
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Reference
:
H. Ogawa, F. Cornelius, A. Hirata, C. Toyoshima
Sequential Substitution Of K(+) Bound To Na(+), K(+)-Atpase Visualized By X-Ray Crystallography.
Nat Commun V. 6 8004 2015
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Hetero Components
(6, 12)
Info
All Hetero Components
1a: CHOLESTEROL (CLRa)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
3a: TETRAFLUOROMAGNESATE(2-) (MF4a)
4a: MAGNESIUM ION (MGa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: THALLIUM (I) ION (TLa)
6b: THALLIUM (I) ION (TLb)
6c: THALLIUM (I) ION (TLc)
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No.
Name
Count
Type
Full Name
1
CLR
1
Ligand/Ion
CHOLESTEROL
2
K
3
Ligand/Ion
POTASSIUM ION
3
MF4
1
Ligand/Ion
TETRAFLUOROMAGNESATE(2-)
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
TL
3
Ligand/Ion
THALLIUM (I) ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:219 , GLY A:220 , GLU A:221 , ASP A:376 , LYS A:377 , THR A:378 , THR A:617 , GLY A:618 , ASP A:619 , LYS A:698 , ASN A:720 , MG A:2002
binding site for residue MF4 A 2001
02
AC2
SOFTWARE
ASP A:376 , THR A:378 , ASP A:717 , MF4 A:2001
binding site for residue MG A 2002
03
AC3
SOFTWARE
THR A:779 , SER A:782 , ASN A:783 , ASP A:811 , HOH A:2101
binding site for residue K A 2003
04
AC4
SOFTWARE
THR A:779 , SER A:782 , ASN A:783 , ASP A:811 , HOH A:2101
binding site for residue TL A 2004
05
AC5
SOFTWARE
VAL A:329 , ALA A:330 , VAL A:332 , GLU A:334 , ASN A:783 , GLU A:786 , ASP A:811
binding site for residue K A 2005
06
AC6
SOFTWARE
VAL A:329 , ALA A:330 , VAL A:332 , GLU A:334 , ASN A:783 , GLU A:786 , ASP A:811
binding site for residue TL A 2006
07
AC7
SOFTWARE
LEU A:725 , LYS A:726 , ALA A:728 , ASP A:747
binding site for residue K A 2007
08
AC8
SOFTWARE
LEU A:725 , LYS A:726 , ALA A:728 , ASP A:747
binding site for residue TL A 2008
09
AC9
SOFTWARE
GLU A:847 , SER A:851 , ARG B:28
binding site for residue CLR B 3001
10
AD1
SOFTWARE
ASP B:111 , ASN B:114 , SER B:116 , ARG B:154
binding site for Poly-Saccharide residues NAG B 4001 through NAG B 4002 bound to ASN B 114
11
AD2
SOFTWARE
ASN B:159 , GLU B:230
binding site for Mono-Saccharide NAG B 4021 bound to ASN B 159
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (213 KB)
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