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5AVC
Asym. Unit
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Asym.Unit (257 KB)
Biol.Unit 1 (249 KB)
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(1)
Title
:
HUMAN NUCLEOSOME CORE PARTICLE
Authors
:
M. Wakamori, Y. Fujii, T. Umehara, S. Yokoyama
Date
:
12 Jun 15 (Deposition) - 23 Dec 15 (Release) - 23 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Nucleosome Core Particle, Ncp, Acetylation, Dna Binding Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wakamori, Y. Fujii, N. Suka, M. Shirouzu, K. Sakamoto, T. Umehara, S. Yokoyama
Intra- And Inter-Nucleosomal Interactions Of The Histone H4 Tail Revealed With A Human Nucleosome Core Particle With Genetically-Incorporated H4 Tetra-Acetylation
Sci Rep V. 5 17204 2015
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
1i: MANGANESE (II) ION (MNi)
1j: MANGANESE (II) ION (MNj)
1k: MANGANESE (II) ION (MNk)
1l: MANGANESE (II) ION (MNl)
1m: MANGANESE (II) ION (MNm)
1n: MANGANESE (II) ION (MNn)
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No.
Name
Count
Type
Full Name
1
MN
14
Ligand/Ion
MANGANESE (II) ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL D:48 , ASP E:77
binding site for residue MN E 201
02
AC2
SOFTWARE
HOH J:216
binding site for residue MN I 101
03
AC3
SOFTWARE
DG I:48
binding site for residue MN I 102
04
AC4
SOFTWARE
DG I:61 , HOH I:212 , HOH I:215 , HOH I:218
binding site for residue MN I 103
05
AC5
SOFTWARE
DG I:27
binding site for residue MN I 104
06
AC6
SOFTWARE
DG I:5 , HOH I:211 , DG J:-6 , HOH J:215
binding site for residue MN I 105
07
AC7
SOFTWARE
DG I:-3 , DG I:-2 , HOH I:219
binding site for residue MN I 106
08
AC8
SOFTWARE
DG I:-35 , DG I:-34 , HOH I:214
binding site for residue MN I 107
09
AC9
SOFTWARE
DG J:61 , HOH J:214
binding site for residue MN J 101
10
AD1
SOFTWARE
HOH I:201 , DG J:27 , HOH J:202
binding site for residue MN J 102
11
AD2
SOFTWARE
DG J:-3 , HOH J:217
binding site for residue MN J 103
12
AD3
SOFTWARE
DG J:48
binding site for residue MN J 104
13
AD4
SOFTWARE
DG J:-35 , DG J:-34
binding site for residue MN J 105
14
AD5
SOFTWARE
DC I:-5 , DG J:5
binding site for residue MN J 106
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (257 KB)
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