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5AQP
Asym. Unit
Info
Asym.Unit (497 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (164 KB)
Biol.Unit 3 (165 KB)
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(1)
Title
:
FRAGMENT-BASED SCREENING OF HSP70 SHEDS LIGHT ON THE FUNCTIONAL ROLE OF ATP-BINDING SITE RESIDUES
Authors
:
A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheesema M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Rich C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Date
:
22 Sep 15 (Deposition) - 05 Oct 16 (Release) - 05 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,D (1x)
Biol. Unit 2: E,F (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Heat Shock Protein, Hsp70, Hsp72, Hsc70, Atpase, Bag1, Chaperone, Fragment
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Jones, I. M. Westwood, J. D. Osborne, T. P. Matthews, M. D. Cheeseman, M. G. Rowlands, F. Jeganathan, R. Burke, D. Lee, N. Kadi, M. Liu, M. Richards, C. Mcandrew, N. Yahya, S. E. Dobson, K. Jones, P. Workman, I. Collins, R. L. M. Van Montfort
Fragment-Based Screening Of Hsp70 Sheds Light On The Functional Role Of Atp-Binding Site Residues
To Be Published
[
close entry info
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: QUINAZOLIN-4-AMINE (1LQa)
1b: QUINAZOLIN-4-AMINE (1LQb)
1c: QUINAZOLIN-4-AMINE (1LQc)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
2e: DIMETHYL SULFOXIDE (DMSe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1LQ
3
Ligand/Ion
QUINAZOLIN-4-AMINE
2
DMS
5
Ligand/Ion
DIMETHYL SULFOXIDE
3
GOL
14
Ligand/Ion
GLYCEROL
4
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG C:272 , SER C:275 , GLY C:339 , ARG C:342 , ILE C:343 , HOH C:2155
BINDING SITE FOR RESIDUE 1LQ C1382
02
AC2
SOFTWARE
ARG A:272 , SER A:275 , GLY A:339 , ARG A:342 , HOH A:2139
BINDING SITE FOR RESIDUE 1LQ A1382
03
AC3
SOFTWARE
ARG E:272 , SER E:275 , GLY E:339 , ARG E:342 , HOH E:2075
BINDING SITE FOR RESIDUE 1LQ E1382
04
AC4
SOFTWARE
ASN C:256 , ARG C:258 , ARG C:262 , LEU C:287 , LEU D:218 , GLN D:245 , GOL D:1262
BINDING SITE FOR RESIDUE GOL C1383
05
AC5
SOFTWARE
SER D:150 , GLU D:155 , ASN D:229 , LYS D:231 , ASP D:232
BINDING SITE FOR RESIDUE GOL D1260
06
AC6
SOFTWARE
LEU F:148 , SER F:150 , ASN F:151 , GLU F:155 , ASN F:229 , PHE F:230 , LYS F:231 , ASP F:232
BINDING SITE FOR RESIDUE GOL F1260
07
AC7
SOFTWARE
ASN A:256 , ARG A:258 , ARG A:262 , SER A:286 , LEU A:287 , GLN B:245
BINDING SITE FOR RESIDUE GOL A1383
08
AC8
SOFTWARE
ASN B:151 , GLU B:155 , ASN B:229 , PHE B:230 , LYS B:231 , ASP B:232
BINDING SITE FOR RESIDUE GOL B1261
09
AC9
SOFTWARE
LYS D:242 , ALA D:246 , GLU D:250 , HOH D:2032 , HOH D:2033
BINDING SITE FOR RESIDUE GOL D1261
10
BC1
SOFTWARE
ARG C:258 , GOL C:1383 , HOH C:2138 , HOH C:2208 , GLN D:245 , ALA D:249
BINDING SITE FOR RESIDUE GOL D1262
11
BC2
SOFTWARE
ARG C:76 , TYR C:149 , GLN C:154 , HOH C:2082
BINDING SITE FOR RESIDUE GOL C1384
12
BC3
SOFTWARE
ASN E:235 , ASN E:239 , ILE E:242 , VAL E:260 , ARG E:264
BINDING SITE FOR RESIDUE GOL E1383
13
BC4
SOFTWARE
ASP E:10 , GLY E:12 , LYS E:71 , ASP E:199 , GLY E:201 , GLY E:338 , HOH E:2004
BINDING SITE FOR RESIDUE GOL E1384
14
BC5
SOFTWARE
TYR C:15 , THR C:37 , ASP C:366 , GOL C:1386
BINDING SITE FOR RESIDUE GOL C1385
15
BC6
SOFTWARE
THR C:14 , TYR C:15 , GLY C:202 , ASP C:366 , GOL C:1385 , TRS C:1389 , HOH C:2009
BINDING SITE FOR RESIDUE GOL C1386
16
BC7
SOFTWARE
ALA C:60 , HOH C:2144 , LYS D:208 , GLU D:255
BINDING SITE FOR RESIDUE GOL D1263
17
BC8
SOFTWARE
ASN E:256 , ARG E:262 , LEU E:287 , LEU F:218 , GLN F:245
BINDING SITE FOR RESIDUE GOL E1385
18
BC9
SOFTWARE
LYS A:71 , ARG A:72 , ARG A:76 , TYR A:149 , HOH A:2041
BINDING SITE FOR RESIDUE DMS A1384
19
CC1
SOFTWARE
LYS C:71 , ARG C:72 , ARG C:76 , TYR C:149 , HOH C:2036
BINDING SITE FOR RESIDUE DMS C1387
20
CC2
SOFTWARE
ILE C:28 , ILE C:29 , ALA C:30 , ARG C:36 , TYR C:134
BINDING SITE FOR RESIDUE DMS C1388
21
CC3
SOFTWARE
ILE A:28 , ILE A:29 , ALA A:30 , ARG A:36 , TYR A:134
BINDING SITE FOR RESIDUE DMS A1385
22
CC4
SOFTWARE
ILE E:28 , ILE E:29 , ALA E:30 , ARG E:36 , TYR E:134
BINDING SITE FOR RESIDUE DMS E1386
23
CC5
SOFTWARE
ASP A:10 , ASP A:199 , GLY A:201 , GLY A:338 , VAL A:369 , HOH A:2014 , HOH A:2177
BINDING SITE FOR RESIDUE TRS A1386
24
CC6
SOFTWARE
ASP C:10 , GLY C:12 , LYS C:71 , GLU C:175 , ASP C:199 , GLY C:201 , GLY C:338 , VAL C:369 , GOL C:1386 , HOH C:2014 , HOH C:2206
BINDING SITE FOR RESIDUE TRS C1389
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain F
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (497 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
Header - Biol.Unit 1
Biol.Unit 2 (164 KB)
Header - Biol.Unit 2
Biol.Unit 3 (165 KB)
Header - Biol.Unit 3
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