PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
5AM9
Biol. Unit 1
Info
Asym.Unit (866 KB)
Biol.Unit 1 (219 KB)
Biol.Unit 2 (217 KB)
Biol.Unit 3 (221 KB)
Biol.Unit 4 (218 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE ANGIOTENSIN-1 CONVERTING ENZYME N-DOMAIN IN COMPLEX WITH AMYLOID-BETA 10-16
Authors
:
G. Masuyer, K. M. Larmuth, R. G. Douglas, E. D. Sturrock, K. R. Acharya
Date
:
10 Mar 15 (Deposition) - 13 Jan 16 (Release) - 06 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: D (1x)
Biol. Unit 4: A (1x)
Keywords
:
Hydrolase, Metalloprotease, Amyloid- Beta
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Larmuth, G. Masuyer, R. G. Douglas, E. D. Sturrock, K. R. Acharya
The Kinetic And Structural Characterisation Of Amyloid-Beta Metabolism By Human Angiotensin-1- Converting Enzyme (Ace)
Febs J. V. 283 1060 2016
[
close entry info
]
Hetero Components
(6, 14)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: ALPHA-L-FUCOSE (FUCa)
4b: ALPHA-L-FUCOSE (FUCb)
4c: ALPHA-L-FUCOSE (FUCc)
4d: ALPHA-L-FUCOSE (FUCd)
4e: ALPHA-L-FUCOSE (FUCe)
5a: BETA-L-FUCOSE (FULa)
6a: GLUTAMINE (GLNa)
6b: GLUTAMINE (GLNb)
7a: GLUTAMIC ACID (GLUa)
7b: GLUTAMIC ACID (GLUb)
8a: LYSINE (LYSa)
8b: LYSINE (LYSb)
9a: ALPHA-D-MANNOSE (MANa)
9b: ALPHA-D-MANNOSE (MANb)
11a: N-ACETYL-D-GLUCOSAMINE (NAGa)
11b: N-ACETYL-D-GLUCOSAMINE (NAGb)
11c: N-ACETYL-D-GLUCOSAMINE (NAGc)
11d: N-ACETYL-D-GLUCOSAMINE (NAGd)
11e: N-ACETYL-D-GLUCOSAMINE (NAGe)
11f: N-ACETYL-D-GLUCOSAMINE (NAGf)
11g: N-ACETYL-D-GLUCOSAMINE (NAGg)
11h: N-ACETYL-D-GLUCOSAMINE (NAGh)
11i: N-ACETYL-D-GLUCOSAMINE (NAGi)
11j: N-ACETYL-D-GLUCOSAMINE (NAGj)
11k: N-ACETYL-D-GLUCOSAMINE (NAGk)
11l: N-ACETYL-D-GLUCOSAMINE (NAGl)
11m: N-ACETYL-D-GLUCOSAMINE (NAGm)
11n: N-ACETYL-D-GLUCOSAMINE (NAGn)
11o: N-ACETYL-D-GLUCOSAMINE (NAGo)
11p: N-ACETYL-D-GLUCOSAMINE (NAGp)
11q: N-ACETYL-D-GLUCOSAMINE (NAGq)
11r: N-ACETYL-D-GLUCOSAMINE (NAGr)
11s: N-ACETYL-D-GLUCOSAMINE (NAGs)
11t: N-ACETYL-D-GLUCOSAMINE (NAGt)
10a: SODIUM ION (NAa)
10b: SODIUM ION (NAb)
12a: HEXAETHYLENE GLYCOL (P6Ga)
12b: HEXAETHYLENE GLYCOL (P6Gb)
12c: HEXAETHYLENE GLYCOL (P6Gc)
12d: HEXAETHYLENE GLYCOL (P6Gd)
13a: DI(HYDROXYETHYL)ETHER (PEGa)
13b: DI(HYDROXYETHYL)ETHER (PEGb)
13c: DI(HYDROXYETHYL)ETHER (PEGc)
13d: DI(HYDROXYETHYL)ETHER (PEGd)
13e: DI(HYDROXYETHYL)ETHER (PEGe)
13f: DI(HYDROXYETHYL)ETHER (PEGf)
13g: DI(HYDROXYETHYL)ETHER (PEGg)
13h: DI(HYDROXYETHYL)ETHER (PEGh)
13i: DI(HYDROXYETHYL)ETHER (PEGi)
13j: DI(HYDROXYETHYL)ETHER (PEGj)
13k: DI(HYDROXYETHYL)ETHER (PEGk)
13l: DI(HYDROXYETHYL)ETHER (PEGl)
13m: DI(HYDROXYETHYL)ETHER (PEGm)
13n: DI(HYDROXYETHYL)ETHER (PEGn)
14a: VALINE (VALa)
14b: VALINE (VALb)
15a: ZINC ION (ZNa)
15b: ZINC ION (ZNb)
15c: ZINC ION (ZNc)
15d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
5
FUL
-1
Ligand/Ion
BETA-L-FUCOSE
6
GLN
-1
Mod. Amino Acid
GLUTAMINE
7
GLU
1
Mod. Amino Acid
GLUTAMIC ACID
8
LYS
-1
Mod. Amino Acid
LYSINE
9
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
10
NA
-1
Ligand/Ion
SODIUM ION
11
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
12
P6G
-1
Ligand/Ion
HEXAETHYLENE GLYCOL
13
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
14
VAL
1
Mod. Amino Acid
VALINE
15
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC6 (SOFTWARE)
02: BC6 (SOFTWARE)
03: BC7 (SOFTWARE)
04: BC8 (SOFTWARE)
05: BC9 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: DC5 (SOFTWARE)
10: DC9 (SOFTWARE)
11: EC1 (SOFTWARE)
12: EC2 (SOFTWARE)
13: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
GLN A:286 , TRP A:288 , HIS A:292 , PEG A:1201 , GLN C:286 , TRP C:288 , HIS C:292 , ILE C:408
BINDING SITE FOR RESIDUE P6G A1202
02
BC6
SOFTWARE
HIS C:361 , HIS C:365 , GLU C:389 , HOH C:2329
BINDING SITE FOR RESIDUE ZN C1001
03
BC7
SOFTWARE
TYR C:202 , PRO C:385 , ARG C:500 , HOH C:2194
BINDING SITE FOR RESIDUE CL C1002
04
BC8
SOFTWARE
GLU C:262 , ASN C:263 , ASP C:354 , HOH C:2244 , HOH C:2250 , HOH C:2252
BINDING SITE FOR RESIDUE CA C1003
05
BC9
SOFTWARE
ASP C:189 , GLY C:190
BINDING SITE FOR RESIDUE PEG C1200
06
CC1
SOFTWARE
ARG A:453 , TYR A:465 , TYR C:465 , HOH C:2379
BINDING SITE FOR RESIDUE PEG C1201
07
CC2
SOFTWARE
SER C:39
BINDING SITE FOR RESIDUE PEG C1202
08
CC3
SOFTWARE
TYR C:369
BINDING SITE FOR RESIDUE PEG C1203
09
DC5
SOFTWARE
GLU A:161 , ASN A:480 , THR A:482 , HIS A:483 , ARG C:245 , GLU C:596
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1100 THROUGH FUL A1101 BOUND TO ASN A 480
10
DC9
SOFTWARE
ASN C:45 , THR C:47 , GLU C:49 , ASN C:50 , HOH C:2461
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C1102 THROUGH NAG C1103 BOUND TO ASN C 45
11
EC1
SOFTWARE
GLN C:9 , PHE C:10 , SER C:11 , ASN C:416 , GLU C:522 , PRO C:524 , GLN C:527 , HOH C:2416 , HOH C:2418 , HOH C:2462 , HOH C:2463 , HOH C:2464 , HOH C:2465
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C1104 THROUGH FUC C1107 BOUND TO ASN C 416
12
EC2
SOFTWARE
ARG A:245 , GLU A:596 , THR C:478 , ASN C:480 , THR C:482
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C1100 THROUGH FUC C1101 BOUND TO ASN C 480
13
EC8
SOFTWARE
GLN C:259 , HIS C:331 , ALA C:332 , GLU C:362 , LYS C:489 , HIS C:491 , TYR C:498 , TYR C:501 , HOH C:2304 , HOH C:2322 , HOH C:2323 , HOH C:2328 , HOH C:2329 , HOH C:2397 , HOH C:3001 , HOH C:3002
BINDING SITE FOR DI-PEPTIDE GLU C 911 AND VAL C 912
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (866 KB)
Header - Asym.Unit
Biol.Unit 1 (219 KB)
Header - Biol.Unit 1
Biol.Unit 2 (217 KB)
Header - Biol.Unit 2
Biol.Unit 3 (221 KB)
Header - Biol.Unit 3
Biol.Unit 4 (218 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5AM9
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
