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5AG0
Biol. Unit 1
Info
Asym.Unit (162 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
DYP-TYPE PEROXIDASE OF AURICULARIA AURICULA-JUDAE (AAUDYPI) CRYSTALLIZED AT PH 6.5
Authors
:
E. Strittmatter, K. Piontek, D. A. Plattner
Date
:
27 Jan 15 (Deposition) - 09 Mar 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Dye-Decolorizing Peroxidase, Dyp, Fungal, Heme, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Strittmatter, K. Piontek, D. A. Plattner
Crystallographic Trapping Of A Covalently Modified Heme In A Dye-Decolorizing Peroxidase
To Be Published
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close entry info
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Hetero Components
(7, 19)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
4a: GLYCOLIC ACID (GOAa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
5l: GLYCEROL (GOLl)
5m: GLYCEROL (GOLm)
5n: GLYCEROL (GOLn)
5o: GLYCEROL (GOLo)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CAC
1
Ligand/Ion
CACODYLATE ION
3
FMT
2
Ligand/Ion
FORMIC ACID
4
GOA
1
Ligand/Ion
GLYCOLIC ACID
5
GOL
9
Ligand/Ion
GLYCEROL
6
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC2 (SOFTWARE)
15: CC3 (SOFTWARE)
16: CC5 (SOFTWARE)
17: CC7 (SOFTWARE)
18: CC8 (SOFTWARE)
19: CC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:162 , PHE A:166 , LEU A:167 , ASP A:168 , GLY A:169 , ILE A:170 , ALA A:171 , GLN A:221 , ARG A:255 , HIS A:304 , ILE A:305 , THR A:308 , ARG A:309 , ARG A:311 , ARG A:332 , LEU A:357 , PHE A:359 , PHE A:370 , ILE A:398 , FMT A:1456 , HOH A:2253 , HOH A:2270 , HOH A:2277 , HOH A:2386
BINDING SITE FOR RESIDUE HEM A1449
02
AC3
SOFTWARE
SER A:286 , HIS A:287 , ALA A:288 , HOH A:2397
BINDING SITE FOR RESIDUE CAC A1455
03
AC5
SOFTWARE
ARG A:332 , LEU A:357 , PHE A:359 , HEM A:1449 , GOA A:1459 , HOH A:2317
BINDING SITE FOR RESIDUE FMT A1456
04
AC7
SOFTWARE
LYS A:99 , HOH A:2363 , HOH A:2366
BINDING SITE FOR RESIDUE FMT A1457
05
AC8
SOFTWARE
SER A:3 , LEU A:4 , ASN A:5 , ILE A:9 , GLY A:210 , HOH A:2009 , HOH A:2206
BINDING SITE FOR RESIDUE GOL A1458
06
AC9
SOFTWARE
ASP A:168 , GLY A:169 , GLN A:172 , ARG A:332 , SER A:333 , GLY A:334 , FMT A:1456
BINDING SITE FOR RESIDUE GOA A1459
07
BC3
SOFTWARE
ASP A:129 , GLN A:130 , HOH A:2142 , HOH A:2398 , HOH A:2399 , HOH A:2400 , SER B:152 , PRO B:339 , GOL B:1457
BINDING SITE FOR RESIDUE GOL A1460
08
BC5
SOFTWARE
GOL A:1460 , SER B:150 , SER B:152 , TYR B:337 , GLY B:338 , HOH B:2126
BINDING SITE FOR RESIDUE GOL B1457
09
BC6
SOFTWARE
ASP A:42 , VAL A:46 , GLN A:131 , SER A:134 , ILE A:135 , THR A:138 , HOH A:2149
BINDING SITE FOR RESIDUE GOL A1461
10
BC7
SOFTWARE
GLY A:169 , GLY A:274 , ALA A:275 , ASN A:280 , HOH A:2184
BINDING SITE FOR RESIDUE GOL A1462
11
BC8
SOFTWARE
GLY A:196 , ALA A:197 , ASN A:199 , ASP A:200 , GOL A:1464 , GOL A:1465
BINDING SITE FOR RESIDUE GOL A1463
12
BC9
SOFTWARE
PRO A:201 , GOL A:1463 , HOH A:2209 , ARG B:445 , ALA B:448
BINDING SITE FOR RESIDUE GOL A1464
13
CC1
SOFTWARE
GLY A:196 , GOL A:1463 , SER B:206 , VAL B:209 , HOH B:2168
BINDING SITE FOR RESIDUE GOL A1465
14
CC2
SOFTWARE
SER A:206 , TRP A:207 , VAL A:209 , HOH A:2213 , HOH A:2214 , GOL B:1459
BINDING SITE FOR RESIDUE GOL A1466
15
CC3
SOFTWARE
ASN A:227 , LEU A:231 , GLN A:242 , ALA A:245 , ASP A:246 , HOH A:2245 , HOH A:2403
BINDING SITE FOR RESIDUE GOL A1467
16
CC5
SOFTWARE
GOL A:1466 , GLY B:196 , ALA B:197 , THR B:198 , ASN B:199 , ASP B:200
BINDING SITE FOR RESIDUE GOL B1459
17
CC7
SOFTWARE
GLN A:278 , ASN A:282 , PRO A:320 , HOH A:2272 , HOH A:2387 , HOH A:2388 , HOH A:2390
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1450 THROUGH BMA A1452 BOUND TO ASN A 282
18
CC8
SOFTWARE
LYS A:228 , ASP A:232 , ALA A:347 , ASN A:349 , HOH A:2391
BINDING SITE FOR MONO-SACCHARIDE NAG A1453 BOUND TO ASN A 349
19
CC9
SOFTWARE
ASN A:415 , SER A:417 , ALA A:418 , HOH A:2377 , HOH A:2392 , HOH A:2394 , HOH A:2395 , HOH A:2396
BINDING SITE FOR MONO-SACCHARIDE NAG A1454 BOUND TO ASN A 415
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
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