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5AG0
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
DYP-TYPE PEROXIDASE OF AURICULARIA AURICULA-JUDAE (AAUDYPI) CRYSTALLIZED AT PH 6.5
Authors
:
E. Strittmatter, K. Piontek, D. A. Plattner
Date
:
27 Jan 15 (Deposition) - 09 Mar 16 (Release) - 09 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Dye-Decolorizing Peroxidase, Dyp, Fungal, Heme, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Strittmatter, K. Piontek, D. A. Plattner
Crystallographic Trapping Of A Covalently Modified Heme In A Dye-Decolorizing Peroxidase
To Be Published
[
close entry info
]
Hetero Components
(7, 31)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
4a: GLYCOLIC ACID (GOAa)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
5l: GLYCEROL (GOLl)
5m: GLYCEROL (GOLm)
5n: GLYCEROL (GOLn)
5o: GLYCEROL (GOLo)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CAC
2
Ligand/Ion
CACODYLATE ION
3
FMT
4
Ligand/Ion
FORMIC ACID
4
GOA
1
Ligand/Ion
GLYCOLIC ACID
5
GOL
15
Ligand/Ion
GLYCEROL
6
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:162 , PHE A:166 , LEU A:167 , ASP A:168 , GLY A:169 , ILE A:170 , ALA A:171 , GLN A:221 , ARG A:255 , HIS A:304 , ILE A:305 , THR A:308 , ARG A:309 , ARG A:311 , ARG A:332 , LEU A:357 , PHE A:359 , PHE A:370 , ILE A:398 , FMT A:1456 , HOH A:2253 , HOH A:2270 , HOH A:2277 , HOH A:2386
BINDING SITE FOR RESIDUE HEM A1449
02
AC2
SOFTWARE
GLU B:162 , PHE B:166 , LEU B:167 , ASP B:168 , GLY B:169 , ILE B:170 , ALA B:171 , LEU B:219 , GLN B:221 , ARG B:255 , HIS B:304 , THR B:308 , ARG B:309 , ARG B:311 , ARG B:332 , LEU B:357 , PHE B:359 , PHE B:370 , ILE B:398 , FMT B:1460 , HOH B:2186 , HOH B:2201 , HOH B:2207 , HOH B:2276
BINDING SITE FOR RESIDUE HEM B1449
03
AC3
SOFTWARE
SER A:286 , HIS A:287 , ALA A:288 , HOH A:2397
BINDING SITE FOR RESIDUE CAC A1455
04
AC4
SOFTWARE
HIS B:287 , ALA B:288
BINDING SITE FOR RESIDUE CAC B1452
05
AC5
SOFTWARE
ARG A:332 , LEU A:357 , PHE A:359 , HEM A:1449 , GOA A:1459 , HOH A:2317
BINDING SITE FOR RESIDUE FMT A1456
06
AC6
SOFTWARE
ARG B:154 , GLU B:158 , MET B:163 , HOH B:2190
BINDING SITE FOR RESIDUE FMT B1453
07
AC7
SOFTWARE
LYS A:99 , HOH A:2363 , HOH A:2366
BINDING SITE FOR RESIDUE FMT A1457
08
AC8
SOFTWARE
SER A:3 , LEU A:4 , ASN A:5 , ILE A:9 , GLY A:210 , HOH A:2009 , HOH A:2206
BINDING SITE FOR RESIDUE GOL A1458
09
AC9
SOFTWARE
ASP A:168 , GLY A:169 , GLN A:172 , ARG A:332 , SER A:333 , GLY A:334 , FMT A:1456
BINDING SITE FOR RESIDUE GOA A1459
10
BC1
SOFTWARE
PRO B:385 , GLY B:386 , LYS B:387 , ALA B:390 , HOH B:2257
BINDING SITE FOR RESIDUE GOL B1454
11
BC2
SOFTWARE
PRO B:235 , LEU B:247 , PRO B:413 , SER B:414 , HOH B:2178
BINDING SITE FOR RESIDUE GOL B1455
12
BC3
SOFTWARE
ASP A:129 , GLN A:130 , HOH A:2142 , HOH A:2398 , HOH A:2399 , HOH A:2400 , SER B:152 , PRO B:339 , GOL B:1457
BINDING SITE FOR RESIDUE GOL A1460
13
BC4
SOFTWARE
LEU B:149 , TYR B:337 , HOH B:2120 , HOH B:2244
BINDING SITE FOR RESIDUE GOL B1456
14
BC5
SOFTWARE
GOL A:1460 , SER B:150 , SER B:152 , TYR B:337 , GLY B:338 , HOH B:2126
BINDING SITE FOR RESIDUE GOL B1457
15
BC6
SOFTWARE
ASP A:42 , VAL A:46 , GLN A:131 , SER A:134 , ILE A:135 , THR A:138 , HOH A:2149
BINDING SITE FOR RESIDUE GOL A1461
16
BC7
SOFTWARE
GLY A:169 , GLY A:274 , ALA A:275 , ASN A:280 , HOH A:2184
BINDING SITE FOR RESIDUE GOL A1462
17
BC8
SOFTWARE
GLY A:196 , ALA A:197 , ASN A:199 , ASP A:200 , GOL A:1464 , GOL A:1465
BINDING SITE FOR RESIDUE GOL A1463
18
BC9
SOFTWARE
PRO A:201 , GOL A:1463 , HOH A:2209 , ARG B:445 , ALA B:448
BINDING SITE FOR RESIDUE GOL A1464
19
CC1
SOFTWARE
GLY A:196 , GOL A:1463 , SER B:206 , VAL B:209 , HOH B:2168
BINDING SITE FOR RESIDUE GOL A1465
20
CC2
SOFTWARE
SER A:206 , TRP A:207 , VAL A:209 , HOH A:2213 , HOH A:2214 , GOL B:1459
BINDING SITE FOR RESIDUE GOL A1466
21
CC3
SOFTWARE
ASN A:227 , LEU A:231 , GLN A:242 , ALA A:245 , ASP A:246 , HOH A:2245 , HOH A:2403
BINDING SITE FOR RESIDUE GOL A1467
22
CC4
SOFTWARE
ASP B:42 , GLN B:131 , SER B:134 , HOH B:2036
BINDING SITE FOR RESIDUE GOL B1458
23
CC5
SOFTWARE
GOL A:1466 , GLY B:196 , ALA B:197 , THR B:198 , ASN B:199 , ASP B:200
BINDING SITE FOR RESIDUE GOL B1459
24
CC6
SOFTWARE
ARG B:332 , LEU B:357 , PHE B:359 , HEM B:1449 , HOH B:2235 , HOH B:2236
BINDING SITE FOR RESIDUE FMT B1460
25
CC7
SOFTWARE
GLN A:278 , ASN A:282 , PRO A:320 , HOH A:2272 , HOH A:2387 , HOH A:2388 , HOH A:2390
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1450 THROUGH BMA A1452 BOUND TO ASN A 282
26
CC8
SOFTWARE
LYS A:228 , ASP A:232 , ALA A:347 , ASN A:349 , HOH A:2391
BINDING SITE FOR MONO-SACCHARIDE NAG A1453 BOUND TO ASN A 349
27
CC9
SOFTWARE
ASN A:415 , SER A:417 , ALA A:418 , HOH A:2377 , HOH A:2392 , HOH A:2394 , HOH A:2395 , HOH A:2396
BINDING SITE FOR MONO-SACCHARIDE NAG A1454 BOUND TO ASN A 415
28
DC1
SOFTWARE
GLN B:278 , ARG B:279 , ASN B:282 , PRO B:320 , HOH B:2203
BINDING SITE FOR MONO-SACCHARIDE NAG B1451 BOUND TO ASN B 282
29
DC2
SOFTWARE
ASP B:232 , ALA B:347 , ASN B:349 , HOH B:2174
BINDING SITE FOR MONO-SACCHARIDE NAG B1450 BOUND TO ASN B 349
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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