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5AFZ
Asym. Unit
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Asym.Unit (113 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
THROMBIN IN COMPLEX WITH (2R)-2-(BENZYLSULFONYLAMINO)-N-(2-( (4-CARBAMIMIDOYLPHENYL)METHYLAMINO)-2-OXO-PROPYL)-3-PHENYL-PROPANAMIDE
Authors
:
E. Ruehmann, A. Heine, G. Klebe
Date
:
27 Jan 15 (Deposition) - 26 Aug 15 (Release) - 23 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.53
Chains
:
Asym. Unit : H,I,L
Biol. Unit 1: H,I,L (1x)
Keywords
:
Hydrolase, Hydrolase Inhibitor Complex, Serine Protease, Blood Coagulation, Blood Clotting, Convertion Of Fibrinogen To Fibrin, Blood Clotting Inhibitor, Thrombin Inhibitor, Fragment, Glycosylation, Blood
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Reference
:
E. Ruehmann, M. Betz, A. Heine, G. Klebe
Fragments Can Bind Either More Enthalpy Or Entropy-Driven: Crystal Structures And Residual Hydration Pattern Suggest Why.
J. Med. Chem. V. 58 6960 2015
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Hetero Components
(5, 6)
Info
All Hetero Components
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
3a: PHOSPHATE ION (PO4a)
4a: O-SULFO-L-TYROSINE (TYSa)
5a: N-(BENZYLSULFONYL)-D-PHENYLALANYL-... (UETa)
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No.
Name
Count
Type
Full Name
1
NA
2
Ligand/Ion
SODIUM ION
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
TYS
1
Mod. Residue
O-SULFO-L-TYROSINE
5
UET
1
Ligand/Ion
N-(BENZYLSULFONYL)-D-PHENYLALANYL-N-(4-CARBAMIMIDOYLBENZYL)GLYCINAMIDE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG H:221A , LYS H:224 , HOH H:2147 , HOH H:2148 , HOH H:2158 , HOH H:2176
BINDING SITE FOR RESIDUE NA H1246
2
AC2
SOFTWARE
LYS H:169 , THR H:172
BINDING SITE FOR RESIDUE NA H1247
3
AC3
SOFTWARE
HIS H:57 , TRP H:60D , GLU H:97A , LEU H:99 , ASP H:189 , ALA H:190 , SER H:195 , SER H:214 , TRP H:215 , GLY H:216 , GLU H:217 , GLY H:219 , CYS H:220 , GLY H:226 , HOH H:2041 , HOH H:2171
BINDING SITE FOR RESIDUE UET H1248
4
AC4
SOFTWARE
ASN H:95 , ASP H:100 , ARG H:101 , ARG H:175 , HOH H:2142
BINDING SITE FOR RESIDUE PO4 H1249
5
AC5
SOFTWARE
LEU H:65 , TYR H:76 , GLU H:80 , LYS H:81 , ILE H:82 , PRO I:560 , GLU I:561 , GLU I:562 , LEU I:564
BINDING SITE FOR RESIDUE TYS I1565
6
AC6
SOFTWARE
ASN H:60G
BINDING SITE FOR MONO-SACCHARIDE NAG H1250 BOUND TO ASN H 60G
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (113 KB)
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