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5AEW
Asym. Unit
Info
Asym.Unit (2.5 MB)
Biol.Unit 1 (658 KB)
Biol.Unit 2 (637 KB)
Biol.Unit 3 (635 KB)
Biol.Unit 4 (632 KB)
Biol.Unit 5 (630 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF II9 VARIANT OF BIPHENYL DIOXYGENASE FROM BURKHOLDERIA XENOVORANS LB400 IN COMPLEX WITH BIPHENYL
Authors
:
S. Dhindwal, L. Gomez-Gil, M. Sylvestre, L. D. Eltis, J. T. Bolin, P. Kum
Date
:
10 Jan 15 (Deposition) - 06 Apr 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: S,T,U,V,W,X (1x)
Biol. Unit 2: C,D,E,F,I,J (1x)
Biol. Unit 3: A,B,K,L,O,P (1x)
Biol. Unit 4: G,H,M,N,Q,R (1x)
Biol. Unit 5: G,H,M,N,Q,R (1x)
Keywords
:
Oxidoreductase, Biphenyl Dioxygenase, Bphae-Ii9, Biphenyl, Polychlorinated Biphenyls
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Dhindwal, L. Gomez-Gil, D. B. Neau, T. T. M. Pham, M. Sylvestre, L. D. Eltis, J. T. Bolin, P. Kumar
Structural Basis Of The Enhanced Pollutant-Degrading Capabilities Of An Engineered Biphenyl Dioxygenase.
J. Bacteriol. V. 198 1499 2016
[
close entry info
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Hetero Components
(3, 33)
Info
All Hetero Components
1a: BIPHENYL (BNLa)
1b: BIPHENYL (BNLb)
1c: BIPHENYL (BNLc)
1d: BIPHENYL (BNLd)
1e: BIPHENYL (BNLe)
1f: BIPHENYL (BNLf)
1g: BIPHENYL (BNLg)
1h: BIPHENYL (BNLh)
1i: BIPHENYL (BNLi)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
2d: FE (II) ION (FE2d)
2e: FE (II) ION (FE2e)
2f: FE (II) ION (FE2f)
2g: FE (II) ION (FE2g)
2h: FE (II) ION (FE2h)
2i: FE (II) ION (FE2i)
2j: FE (II) ION (FE2j)
2k: FE (II) ION (FE2k)
2l: FE (II) ION (FE2l)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
3e: FE2/S2 (INORGANIC) CLUSTER (FESe)
3f: FE2/S2 (INORGANIC) CLUSTER (FESf)
3g: FE2/S2 (INORGANIC) CLUSTER (FESg)
3h: FE2/S2 (INORGANIC) CLUSTER (FESh)
3i: FE2/S2 (INORGANIC) CLUSTER (FESi)
3j: FE2/S2 (INORGANIC) CLUSTER (FESj)
3k: FE2/S2 (INORGANIC) CLUSTER (FESk)
3l: FE2/S2 (INORGANIC) CLUSTER (FESl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BNL
9
Ligand/Ion
BIPHENYL
2
FE2
12
Ligand/Ion
FE (II) ION
3
FES
12
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
[
close Hetero Component info
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Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:100 , HIS A:102 , ARG A:103 , CYS A:120 , HIS A:123 , TRP A:125
BINDING SITE FOR RESIDUE FES A 460
02
AC2
SOFTWARE
GLN A:226 , HIS A:233 , HIS A:239 , ASP A:388 , HOH A:2228 , HOH A:2232 , HOH A:2236
BINDING SITE FOR RESIDUE FE2 A 461
03
AC3
SOFTWARE
CYS C:100 , HIS C:102 , ARG C:103 , CYS C:120 , HIS C:123 , TRP C:125
BINDING SITE FOR RESIDUE FES C 460
04
AC4
SOFTWARE
GLN C:226 , HIS C:233 , HIS C:239 , ASP C:388 , HOH C:2244
BINDING SITE FOR RESIDUE FE2 C 461
05
AC5
SOFTWARE
GLN C:226 , ASP C:230 , MET C:231 , HIS C:233 , HIS C:323 , LEU C:333 , HOH C:2244
BINDING SITE FOR RESIDUE BNL C 462
06
AC6
SOFTWARE
CYS E:100 , HIS E:102 , ARG E:103 , CYS E:120 , HIS E:123 , TRP E:125
BINDING SITE FOR RESIDUE FES E 460
07
AC7
SOFTWARE
GLN E:226 , HIS E:233 , HIS E:239 , ASP E:388 , HOH E:2167
BINDING SITE FOR RESIDUE FE2 E 461
08
AC8
SOFTWARE
GLN E:226 , ASP E:230 , MET E:231 , HIS E:233 , HIS E:323 , LEU E:333 , HOH E:2167
BINDING SITE FOR RESIDUE BNL E 462
09
AC9
SOFTWARE
CYS G:100 , HIS G:102 , ARG G:103 , CYS G:120 , HIS G:123 , TRP G:125
BINDING SITE FOR RESIDUE FES G 460
10
BC1
SOFTWARE
GLN G:226 , HIS G:233 , HIS G:239 , ASP G:388 , HOH G:2125 , HOH G:2131
BINDING SITE FOR RESIDUE FE2 G 461
11
BC2
SOFTWARE
CYS I:100 , HIS I:102 , ARG I:103 , MET I:105 , CYS I:120 , HIS I:123 , TRP I:125
BINDING SITE FOR RESIDUE FES I 460
12
BC3
SOFTWARE
GLN I:226 , HIS I:233 , HIS I:239 , ASP I:388 , HOH I:2142
BINDING SITE FOR RESIDUE FE2 I 461
13
BC4
SOFTWARE
GLN I:226 , ASP I:230 , HIS I:233 , HIS I:323 , LEU I:333
BINDING SITE FOR RESIDUE BNL I 462
14
BC5
SOFTWARE
CYS K:100 , HIS K:102 , ARG K:103 , MET K:105 , CYS K:120 , HIS K:123 , TRP K:125
BINDING SITE FOR RESIDUE FES K 460
15
BC6
SOFTWARE
GLN K:226 , HIS K:233 , HIS K:239 , ASP K:388 , HOH K:2159 , HOH K:2161
BINDING SITE FOR RESIDUE FE2 K 461
16
BC7
SOFTWARE
GLN K:226 , ASP K:230 , HIS K:233 , HIS K:323 , LEU K:333 , PHE K:384
BINDING SITE FOR RESIDUE BNL K 462
17
BC8
SOFTWARE
CYS M:100 , HIS M:102 , ARG M:103 , CYS M:120 , HIS M:123 , TRP M:125
BINDING SITE FOR RESIDUE FES M 460
18
BC9
SOFTWARE
GLN M:226 , HIS M:233 , HIS M:239 , ASP M:388 , HOH M:2132 , HOH M:2136
BINDING SITE FOR RESIDUE FE2 M 461
19
CC1
SOFTWARE
GLN M:226 , ASP M:230 , HIS M:233 , HIS M:323 , LEU M:333 , PHE M:378 , PHE M:384
BINDING SITE FOR RESIDUE BNL M 462
20
CC2
SOFTWARE
CYS O:100 , HIS O:102 , ARG O:103 , CYS O:120 , HIS O:123 , TRP O:125
BINDING SITE FOR RESIDUE FES O 460
21
CC3
SOFTWARE
GLN O:226 , HIS O:233 , HIS O:239 , ASP O:388 , HOH O:2135
BINDING SITE FOR RESIDUE FE2 O 461
22
CC4
SOFTWARE
GLN O:226 , ASP O:230 , HIS O:233 , HIS O:323 , LEU O:333 , PHE O:384
BINDING SITE FOR RESIDUE BNL O 462
23
CC5
SOFTWARE
CYS Q:100 , HIS Q:102 , CYS Q:120 , HIS Q:123 , TRP Q:125
BINDING SITE FOR RESIDUE FES Q 460
24
CC6
SOFTWARE
GLN Q:226 , HIS Q:233 , HIS Q:239 , ASP Q:388 , HOH Q:2106
BINDING SITE FOR RESIDUE FE2 Q 461
25
CC7
SOFTWARE
GLN Q:226 , ASP Q:230 , HIS Q:233 , GLY Q:321 , HIS Q:323 , LEU Q:333 , HOH Q:2106
BINDING SITE FOR RESIDUE BNL Q 462
26
CC8
SOFTWARE
CYS S:100 , HIS S:102 , ARG S:103 , CYS S:120 , TYR S:122 , HIS S:123 , TRP S:125 , HOH S:2021
BINDING SITE FOR RESIDUE FES S 460
27
CC9
SOFTWARE
GLN S:226 , HIS S:233 , HIS S:239 , ASP S:388 , HOH S:2052
BINDING SITE FOR RESIDUE FE2 S 461
28
DC1
SOFTWARE
GLN S:226 , ASP S:230 , MET S:231 , HIS S:233 , HIS S:323 , LEU S:333 , PHE S:384 , HOH S:2052
BINDING SITE FOR RESIDUE BNL S 462
29
DC2
SOFTWARE
CYS U:100 , HIS U:102 , ARG U:103 , CYS U:120 , TYR U:122 , HIS U:123 , TRP U:125
BINDING SITE FOR RESIDUE FES U 460
30
DC3
SOFTWARE
GLN U:226 , HIS U:233 , HIS U:239 , ASP U:388 , HOH U:2100
BINDING SITE FOR RESIDUE FE2 U 461
31
DC4
SOFTWARE
CYS W:100 , HIS W:102 , ARG W:103 , CYS W:120 , TYR W:122 , HIS W:123 , TRP W:125
BINDING SITE FOR RESIDUE FES W 460
32
DC5
SOFTWARE
GLN W:226 , HIS W:233 , HIS W:239 , ASP W:388 , HOH W:2043
BINDING SITE FOR RESIDUE FE2 W 461
33
DC6
SOFTWARE
GLN W:226 , ASP W:230 , HIS W:233 , HIS W:323 , LEU W:333
BINDING SITE FOR RESIDUE BNL W 462
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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Sorry, no Info available
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