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5AEC
Biol. Unit 1
Info
Asym.Unit (153 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
TYPE II BAEYER-VILLIGER MONOOXYGENASE.THE OXYGENATING CONSTITUENT OF 3,6-DIKETOCAMPHANE MONOOXYGENASE FROM CAM PLASMID OF PSEUDOMONAS PUTIDA IN COMPLEX WITH FMN.
Authors
:
M. N. Isupov, E. Schroeder, R. P. Gibson, J. Beecher, G. Donadio, V. Sane S. Dcunha, E. J. Mcghie, C. Sayer, C. F. Davenport, P. C. Lau, Y. Hasegaw H. Iwaki, M. Kadow, K. Loschinski, U. T. Bornscheuer, G. Bourenkov, J. A. Littlechild
Date
:
28 Aug 15 (Deposition) - 09 Sep 15 (Release) - 11 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Biocatalysis, Flavin Monooxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. N. Isupov, E. Schroder, R. P. Gibson, J. Beecher, G. Donadio, V. Saneei, S. A. Dcunha, E. J. Mcghie, C. Sayer, C. F. Davenport, P. C. Lau, Y. Hasegawa, H. Iwaki, M. Kadow, K. Balke, U. T. Bornscheuer, G. Bourenkov, J. A. Littlechild
The Oxygenating Constituent Of 3, 6-Diketocamphane Monooxygenase From The Cam Plasmid Of Pseudomonas Putida: The First Crystal Structure Of A Type Ii Baeyer-Villiger Monooxygenase.
Acta Crystallogr. , Sect. D V. 71 2344 2015
(for further references see the
PDB file header
)
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: PIPERAZINE-N,N'-BIS(2-ETHANESULFON... (PINa)
3b: PIPERAZINE-N,N'-BIS(2-ETHANESULFON... (PINb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
11
Ligand/Ion
GLYCEROL
3
PIN
2
Ligand/Ion
PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)
4
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:111 , TYR A:112 , PRO A:113 , PHE A:203 , ILE A:223 , MET A:294 , HOH A:2099 , HOH A:2188 , HOH A:2291
BINDING SITE FOR RESIDUE PIN A 400
02
AC2
SOFTWARE
TRP A:191 , GLY A:192 , LYS A:194 , GLU B:157 , PRO B:158
BINDING SITE FOR RESIDUE GOL A 401
03
AC3
SOFTWARE
GLN A:97 , ASP A:187 , HOH A:2161 , ARG B:17 , SER B:18 , ALA B:19 , ASN B:53 , GLU B:175
BINDING SITE FOR RESIDUE GOL A 402
04
AC4
SOFTWARE
PHE A:148 , HIS A:161 , GLU A:274 , HOH A:2225 , HOH A:2355 , HOH A:2418
BINDING SITE FOR RESIDUE GOL A 403
05
AC5
SOFTWARE
ASP A:39 , LYS A:72 , GLU A:197 , LYS A:219 , HOH A:2078 , HOH A:2079 , HOH A:2288
BINDING SITE FOR RESIDUE GOL A 404
06
AC6
SOFTWARE
ILE A:223 , PHE A:224 , THR A:258 , TYR A:298 , GLU A:347 , HOH A:2330 , HOH A:2420
BINDING SITE FOR RESIDUE GOL A 405
07
AC7
SOFTWARE
ALA A:109 , GLY A:110 , ALA A:111
BINDING SITE FOR RESIDUE SO4 A1379
08
AC8
SOFTWARE
GLY A:202 , PHE A:203 , SER A:204 , SER A:207 , PRO A:208 , SER A:209
BINDING SITE FOR RESIDUE SO4 A1380
09
AC9
SOFTWARE
ALA B:111 , TYR B:112 , PRO B:113 , PHE B:203 , ILE B:223 , PHE B:292 , GOL B:406 , HOH B:2145 , HOH B:2241 , HOH B:2370 , HOH B:2372
BINDING SITE FOR RESIDUE PIN B 400
10
BC1
SOFTWARE
ARG A:17 , SER A:18 , ALA A:19 , ASN A:53 , HOH A:2054 , GLN B:97 , ALA B:186 , ASP B:187 , PHE B:188 , HOH B:2373
BINDING SITE FOR RESIDUE GOL B 402
11
BC2
SOFTWARE
ASP B:39 , LYS B:72 , GLU B:197 , LYS B:219 , HOH B:2064 , HOH B:2067 , HOH B:2236
BINDING SITE FOR RESIDUE GOL B 404
12
BC3
SOFTWARE
ILE B:223 , PHE B:224 , THR B:258 , TRP B:289 , PHE B:319 , GLU B:347 , HOH B:2020 , HOH B:2289 , HOH B:2375
BINDING SITE FOR RESIDUE GOL B 405
13
BC4
SOFTWARE
TYR B:12 , GLU B:52 , TYR B:112 , LEU B:285 , TRP B:289 , PIN B:400 , CL B:1382 , HOH B:2020 , HOH B:2144 , HOH B:2370
BINDING SITE FOR RESIDUE GOL B 406
14
BC5
SOFTWARE
GLY B:108 , ALA B:109 , ASN B:140 , VAL B:143 , SER B:209 , LEU B:212 , SO4 B:1380 , HOH B:2164 , HOH B:2240 , HOH B:2376
BINDING SITE FOR RESIDUE GOL B 407
15
BC6
SOFTWARE
ASN B:138 , ASN B:140 , ARG B:144
BINDING SITE FOR RESIDUE GOL B 408
16
BC7
SOFTWARE
GLY B:202 , PHE B:203 , SER B:204 , SER B:207 , PRO B:208 , SER B:209
BINDING SITE FOR RESIDUE SO4 B1379
17
BC8
SOFTWARE
GLY B:108 , ALA B:109 , GLY B:110 , THR B:201 , GOL B:407 , HOH B:2141 , HOH B:2240 , HOH B:2377
BINDING SITE FOR RESIDUE SO4 B1380
18
BC9
SOFTWARE
HIS A:46 , TYR A:112 , HOH A:2072 , HOH A:2090
BINDING SITE FOR RESIDUE CL A1381
19
CC1
SOFTWARE
THR A:247 , HOH A:2325
BINDING SITE FOR RESIDUE CL A1382
20
CC2
SOFTWARE
THR B:247
BINDING SITE FOR RESIDUE CL B1381
21
CC3
SOFTWARE
HIS B:46 , TYR B:112 , GOL B:406 , HOH B:2036
BINDING SITE FOR RESIDUE CL B1382
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
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Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (153 KB)
Header - Asym.Unit
Biol.Unit 1 (147 KB)
Header - Biol.Unit 1
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