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5ABD
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VEGFR-1 DOMAIN 2 IN PRESENCE OF CU
Authors
:
J. -F. Gaucher, M. -B. Lascombe, M. Reille-Seroussi, N. Gagey-Eilstei S. Broussy, P. Coric, B. Seijo, B. Gautier, W. -Q. Liu, F. Huguenot, N. Inguimbert, S. Bouaziz, M. Vidal, I. Broutin
Date
:
05 Aug 15 (Deposition) - 28 Sep 16 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : E,I,X
Biol. Unit 1: E (1x)
Biol. Unit 2: I (1x)
Biol. Unit 3: X (1x)
Keywords
:
Signaling Protein, Vegf, Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. -F. Gaucher, M. Reille-Seroussi, N. Gagey-Eilstein, S. Broussy, P. Coric, B. Seijo, M. -B. Lascombe, B. Gautier, W. -Q. Liu, F. Huguenot N. Inguimbert, S. Bouaziz, M. Vidal, I. Broutin
Biophysical Studies Of The Induced Dimerization Of Human Vegf R Receptor 1 Binding Domain By Divalent Metals Competing With Vegf-A
Plos One V. 11 67755 2016
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
CU
5
Ligand/Ion
COPPER (II) ION
2
NA
2
Ligand/Ion
SODIUM ION
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS E:147 , HIS E:223 , HIS X:147 , HIS X:223
BINDING SITE FOR RESIDUE CU X1227
2
AC2
SOFTWARE
HIS I:147 , HIS I:223
BINDING SITE FOR RESIDUE CU I1225
3
AC3
SOFTWARE
GLY I:132 , ARG I:133 , HIS I:214 , HOH I:2001
BINDING SITE FOR RESIDUE CU I1226
4
AC4
SOFTWARE
GLY E:132 , ARG E:133 , HIS X:214 , HOH X:2118
BINDING SITE FOR RESIDUE CU X1228
5
AC5
SOFTWARE
HIS E:214 , GLY X:132 , ARG X:133 , HOH X:2001
BINDING SITE FOR RESIDUE CU X1229
6
AC6
SOFTWARE
GLU E:137 , PRO E:157 , ARG E:159 , TYR E:220 , HOH E:2004 , HOH E:2021
BINDING SITE FOR RESIDUE NA E1227
7
AC7
SOFTWARE
GLU X:137 , TYR X:139 , PRO X:157 , TYR X:220 , HOH X:2010
BINDING SITE FOR RESIDUE NA X1230
8
AC8
SOFTWARE
HIS E:223 , ARG E:224 , HOH E:2082
BINDING SITE FOR RESIDUE SO4 E1228
9
AC9
SOFTWARE
HIS X:223 , ARG X:224 , HOH X:2048 , HOH X:2119
BINDING SITE FOR RESIDUE SO4 X1231
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (161 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (54 KB)
Header - Biol.Unit 3
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