PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
5A79
Biol. Unit 1
Info
Asym.Unit (36 KB)
Biol.Unit 1, α-C (3.0 MB)
Biol.Unit 1 (3.0 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS REVEALED BY CRYO-EM
Authors
:
D. K. Clare, E. Pechnikova, E. Skurat, V. Makarov, O. S. Sokolova, A. G. S E. V Orlova
Date
:
03 Jul 15 (Deposition) - 02 Sep 15 (Release) - 21 Oct 15 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
4.10
Chains
:
Asym. Unit : A,R
Biol. Unit 1: A,R (111x)
Keywords
:
Bsmv, Virus, Helical, Cryo-Em, Image Processing, Msa
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. K. Clare, E. V. Pechnikova, E. V. Skurat, V. V. Makarov, O. S. Sokolova, A. G. Solovyev, E. V. Orlova
Novel Inter-Subunit Contacts In Barley Stripe Mosaic Virus Revealed By Cryo-Electron Microscopy.
Structure V. 23 1815 2015
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain R
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
Asymmetric Unit 25
Asymmetric Unit 26
Asymmetric Unit 27
Asymmetric Unit 28
Asymmetric Unit 29
Asymmetric Unit 30
Asymmetric Unit 31
Asymmetric Unit 32
Asymmetric Unit 33
Asymmetric Unit 34
Asymmetric Unit 35
Asymmetric Unit 36
Asymmetric Unit 37
Asymmetric Unit 38
Asymmetric Unit 39
Asymmetric Unit 40
Asymmetric Unit 41
Asymmetric Unit 42
Asymmetric Unit 43
Asymmetric Unit 44
Asymmetric Unit 45
Asymmetric Unit 46
Asymmetric Unit 47
Asymmetric Unit 48
Asymmetric Unit 49
Asymmetric Unit 50
Asymmetric Unit 51
Asymmetric Unit 52
Asymmetric Unit 53
Asymmetric Unit 54
Asymmetric Unit 55
Asymmetric Unit 56
Asymmetric Unit 57
Asymmetric Unit 58
Asymmetric Unit 59
Asymmetric Unit 60
Asymmetric Unit 61
Asymmetric Unit 62
Asymmetric Unit 63
Asymmetric Unit 64
Asymmetric Unit 65
Asymmetric Unit 66
Asymmetric Unit 67
Asymmetric Unit 68
Asymmetric Unit 69
Asymmetric Unit 70
Asymmetric Unit 71
Asymmetric Unit 72
Asymmetric Unit 73
Asymmetric Unit 74
Asymmetric Unit 75
Asymmetric Unit 76
Asymmetric Unit 77
Asymmetric Unit 78
Asymmetric Unit 79
Asymmetric Unit 80
Asymmetric Unit 81
Asymmetric Unit 82
Asymmetric Unit 83
Asymmetric Unit 84
Asymmetric Unit 85
Asymmetric Unit 86
Asymmetric Unit 87
Asymmetric Unit 88
Asymmetric Unit 89
Asymmetric Unit 90
Asymmetric Unit 91
Asymmetric Unit 92
Asymmetric Unit 93
Asymmetric Unit 94
Asymmetric Unit 95
Asymmetric Unit 96
Asymmetric Unit 97
Asymmetric Unit 98
Asymmetric Unit 99
Asymmetric Unit 100
Asymmetric Unit 101
Asymmetric Unit 102
Asymmetric Unit 103
Asymmetric Unit 104
Asymmetric Unit 105
Asymmetric Unit 106
Asymmetric Unit 107
Asymmetric Unit 108
Asymmetric Unit 109
Asymmetric Unit 110
Asymmetric Unit 111
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (36 KB)
Header - Asym.Unit
Biol.Unit 1 (3.0 MB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5A79
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help