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5A63
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (206 KB)
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Title
:
CRYO-EM STRUCTURE OF THE HUMAN GAMMA-SECRETASE COMPLEX AT 3.4 ANGSTROM RESOLUTION.
Authors
:
X. Bai, C. Yan, G. Yang, P. Lu, D. Ma, L. Sun, R. Zhou, S. H. W. Scheres, Y. Sh
Date
:
24 Jun 15 (Deposition) - 05 Aug 15 (Release) - 28 Dec 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hydrolase, Cryo-Em, Human Gamma-Secretase, Membrane Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
X. Bai, C. Yan, G. Yang, P. Lu, D. Ma, L. Sun, R. Zhou, S. H. W. Scheres, Y. Shi
An Atomic Structure Of Human Gamma-Secretase
Nature V. 525 212 2015
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
3b: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1b)
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No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
NAG
17
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PC1
2
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL B:94 , ALA B:98 , LYS B:101 , TRP B:404 , PHE B:411 , PHE C:6 , ILE C:135 , ALA C:139 , LEU C:142
BINDING SITE FOR RESIDUE PC1 B 1468
02
AC2
SOFTWARE
ILE A:690 , PHE A:698 , THR C:24 , ARG C:31 , ARG C:115 , GLN C:116 , TYR C:119 , LEU C:169 , PHE C:173
BINDING SITE FOR RESIDUE PC1 C 1245
03
AC3
SOFTWARE
PRO A:43 , ASN A:45 , GLU A:188
Binding site for Poly-Saccharide residues NAG A1699 through NAG A1700 bound to ASN A 45
04
AC4
SOFTWARE
ASN A:55 , ALA A:56 , HIS A:58 , PHE A:145 , TYR A:173 , GLU A:174
Binding site for Poly-Saccharide residues NAG A1701 through BMA A1718 bound to ASN A 55
05
AC5
SOFTWARE
ASP A:185 , ASN A:187
Binding site for Mono-Saccharide NAG A1715 bound to ASN A 187
06
AC6
SOFTWARE
ASN A:264 , THR A:266 , GLY A:267 , ASN A:596 , ASP A:598
Binding site for Mono-Saccharide NAG A1714 bound to ASN A 264
07
AC7
SOFTWARE
ASN A:387 , VAL A:390
Binding site for Mono-Saccharide NAG A1705 bound to ASN A 387
08
AC8
SOFTWARE
TYR A:152 , VAL A:383 , LYS A:386 , ASN A:387 , ARG A:432 , ASN A:435
Binding site for Poly-Saccharide residues NAG A1703 through NAG A1704 bound to ASN A 435
09
AC9
SOFTWARE
ASN A:464
Binding site for Mono-Saccharide NAG A1712 bound to ASN A 464
10
BC1
SOFTWARE
ASN A:506
Binding site for Mono-Saccharide NAG A1713 bound to ASN A 506
11
BC2
SOFTWARE
ASN A:530
Binding site for Poly-Saccharide residues NAG A1708 through NAG A1709 bound to ASN A 530
12
BC3
SOFTWARE
GLN A:552 , ASN A:562
Binding site for Poly-Saccharide residues NAG A1710 through NAG A1711 bound to ASN A 562
13
BC4
SOFTWARE
ARG A:520 , TRP A:533 , ASN A:573 , GLY A:576 , VAL A:578 , ARG A:619 , VAL A:621
Binding site for Poly-Saccharide residues NAG A1706 through NAG A1707 bound to ASN A 573
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (215 KB)
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