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5A58
Asym. Unit
Info
Asym.Unit (225 KB)
Biol.Unit 1 (217 KB)
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(1)
Title
:
THE STRUCTURE OF GH101 D764N MUTANT FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH SERINYL T-ANTIGEN
Authors
:
K. J. Gregg, M. D. L. Suits, L. Deng, D. J. Vocadlo, A. B. Boraston
Date
:
16 Jun 15 (Deposition) - 02 Sep 15 (Release) - 28 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Endo-Beta-N-Acetylgalactosaminidase, Glycoside Hydrolase Family 101, Gh101, T-Antigen, Mucin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. J. Gregg, M. D. L. Suits, L. Deng, D. J. Vocadlo, A. B. Boraston
Structural Analysis Of A Family 101 Glycoside Hydrolase In Complex With Carbohydrates Reveals Insights Into Its Mechanism.
J. Biol. Chem. V. 290 25657 2015
[
close entry info
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Hetero Components
(7, 40)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: CITRIC ACID (CITa)
3b: CITRIC ACID (CITb)
4a: 1,2-ETHANEDIOL (EDOa)
4aa: 1,2-ETHANEDIOL (EDOaa)
4ab: 1,2-ETHANEDIOL (EDOab)
4ac: 1,2-ETHANEDIOL (EDOac)
4ad: 1,2-ETHANEDIOL (EDOad)
4ae: 1,2-ETHANEDIOL (EDOae)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
4q: 1,2-ETHANEDIOL (EDOq)
4r: 1,2-ETHANEDIOL (EDOr)
4s: 1,2-ETHANEDIOL (EDOs)
4t: 1,2-ETHANEDIOL (EDOt)
4u: 1,2-ETHANEDIOL (EDOu)
4v: 1,2-ETHANEDIOL (EDOv)
4w: 1,2-ETHANEDIOL (EDOw)
4x: 1,2-ETHANEDIOL (EDOx)
4y: 1,2-ETHANEDIOL (EDOy)
4z: 1,2-ETHANEDIOL (EDOz)
5a: BETA-D-GALACTOSE (GALa)
6a: MANGANESE (II) ION (MNa)
7a: SERINE (SERa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A2G
1
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
CA
3
Ligand/Ion
CALCIUM ION
3
CIT
2
Ligand/Ion
CITRIC ACID
4
EDO
31
Ligand/Ion
1,2-ETHANEDIOL
5
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
6
MN
1
Ligand/Ion
MANGANESE (II) ION
7
SER
1
Mod. Amino Acid
SERINE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:577 , ASN A:579 , ASP A:581 , ASN A:583 , ASP A:588 , HOH A:3454
BINDING SITE FOR RESIDUE CA A2427
02
AC2
SOFTWARE
GLU A:703 , ASP A:728 , HIS A:1258 , HOH A:3613 , HOH A:3715 , HOH A:3716
BINDING SITE FOR RESIDUE MN A2428
03
AC3
SOFTWARE
ASP A:1233 , GLU A:1235 , GLU A:1281 , TRP A:1284 , ASP A:1411 , HOH A:4443
BINDING SITE FOR RESIDUE CA A2429
04
AC4
SOFTWARE
GLY A:1063 , ASN A:1090 , ASP A:1091 , ASP A:1207 , HOH A:4188 , HOH A:4189
BINDING SITE FOR RESIDUE CA A2430
05
AC5
SOFTWARE
THR A:1162 , ARG A:1163 , ARG A:1164 , HOH A:4354 , HOH A:4363 , HOH A:4364 , HOH A:4365 , HOH A:4464 , HOH A:4638 , HOH A:4639 , HOH A:4640 , HOH A:4641
BINDING SITE FOR RESIDUE CIT A2431
06
AC6
SOFTWARE
SER A:1127 , ASN A:1128 , GLY A:1200 , ASP A:1201 , GLU A:1202 , HOH A:4289
BINDING SITE FOR RESIDUE CIT A2432
07
AC7
SOFTWARE
GLU A:796 , TRP A:797 , TRP A:810 , A2G A:2434 , HOH A:3848 , HOH A:4643 , HOH A:4645 , HOH A:4646
BINDING SITE FOR RESIDUE SER A2435
08
AC8
SOFTWARE
GLN A:462 , THR A:463 , ASP A:505 , LYS A:506 , HOH A:3217 , HOH A:4647
BINDING SITE FOR RESIDUE EDO A2436
09
AC9
SOFTWARE
ASP A:1233 , ASN A:1412 , LEU A:1413 , GLN A:1414 , HOH A:4447 , HOH A:4623
BINDING SITE FOR RESIDUE EDO A2437
10
BC1
SOFTWARE
GLU A:323 , SER A:1324 , ASP A:1325 , ASN A:1391 , ARG A:1393 , HOH A:4553
BINDING SITE FOR RESIDUE EDO A2438
11
BC2
SOFTWARE
LYS A:607 , HIS A:835 , GLN A:891 , HOH A:4649
BINDING SITE FOR RESIDUE EDO A2439
12
BC3
SOFTWARE
ASN A:417 , ASP A:1187 , HOH A:4313 , HOH A:4650
BINDING SITE FOR RESIDUE EDO A2440
13
BC4
SOFTWARE
ASP A:482 , LYS A:495 , HOH A:3274
BINDING SITE FOR RESIDUE EDO A2441
14
BC5
SOFTWARE
LYS A:556 , HOH A:4651 , HOH A:4652 , HOH A:4653
BINDING SITE FOR RESIDUE EDO A2442
15
BC6
SOFTWARE
LYS A:635 , TYR A:873 , ASP A:1013 , LYS A:1085 , ALA A:1089 , ASP A:1091 , EDO A:2456
BINDING SITE FOR RESIDUE EDO A2443
16
BC7
SOFTWARE
HIS A:639 , ASN A:874 , LEU A:1011 , GLN A:1037 , PRO A:1038 , HOH A:4654
BINDING SITE FOR RESIDUE EDO A2444
17
BC8
SOFTWARE
SER A:336 , ASP A:416 , GLY A:1185 , HOH A:3189 , HOH A:4656
BINDING SITE FOR RESIDUE EDO A2445
18
BC9
SOFTWARE
THR A:382 , GLU A:392
BINDING SITE FOR RESIDUE EDO A2446
19
CC1
SOFTWARE
GLY A:362 , GLN A:363 , VAL A:364 , GLN A:365 , SER A:457 , GLU A:534 , VAL A:536 , TYR A:541
BINDING SITE FOR RESIDUE EDO A2447
20
CC2
SOFTWARE
TYR A:1179 , PHE A:1181 , VAL A:1237 , ALA A:1238 , GLN A:1239 , PHE A:1242 , HOH A:4421
BINDING SITE FOR RESIDUE EDO A2448
21
CC3
SOFTWARE
PRO A:702 , ASP A:728 , GLN A:729 , ASP A:1278 , LYS A:1287 , PHE A:1402 , HOH A:3711 , HOH A:4508
BINDING SITE FOR RESIDUE EDO A2449
22
CC4
SOFTWARE
TYR A:853 , ALA A:882 , GLN A:958 , HOH A:3967 , HOH A:3968 , HOH A:4058
BINDING SITE FOR RESIDUE EDO A2450
23
CC5
SOFTWARE
ASN A:417 , GLN A:418 , VAL A:573 , SER A:595 , HOH A:3440
BINDING SITE FOR RESIDUE EDO A2451
24
CC6
SOFTWARE
PHE A:450 , ASN A:453 , HIS A:545 , SER A:546 , HOH A:3049
BINDING SITE FOR RESIDUE EDO A2452
25
CC7
SOFTWARE
GLN A:413 , ASN A:1114 , THR A:1183 , EDO A:2455 , HOH A:4658
BINDING SITE FOR RESIDUE EDO A2453
26
CC8
SOFTWARE
TRP A:512 , LYS A:571 , ILE A:596 , MET A:597 , HOH A:3429 , HOH A:4660
BINDING SITE FOR RESIDUE EDO A2454
27
CC9
SOFTWARE
GLN A:413 , HIS A:420 , ASP A:422 , ASN A:1114 , EDO A:2453 , HOH A:3135 , HOH A:3437
BINDING SITE FOR RESIDUE EDO A2455
28
DC1
SOFTWARE
ALA A:1089 , EDO A:2443 , HOH A:3567 , HOH A:3943 , HOH A:4238 , HOH A:4661 , HOH A:4662
BINDING SITE FOR RESIDUE EDO A2456
29
DC2
SOFTWARE
GLN A:1020 , LEU A:1022 , THR A:1030 , ASP A:1032 , HOH A:4147
BINDING SITE FOR RESIDUE EDO A2457
30
DC3
SOFTWARE
THR A:1073 , LYS A:1107 , HOH A:4390
BINDING SITE FOR RESIDUE EDO A2458
31
DC4
SOFTWARE
GLY A:522 , ASP A:525 , HIS A:799 , HOH A:3352 , HOH A:4665 , HOH A:4666
BINDING SITE FOR RESIDUE EDO A2459
32
DC5
SOFTWARE
TYR A:889 , ASN A:929 , LEU A:952 , ASN A:968 , TRP A:969 , HOH A:4063
BINDING SITE FOR RESIDUE EDO A2460
33
DC6
SOFTWARE
TYR A:563 , LYS A:784 , LYS A:788 , HOH A:4667 , HOH A:4668 , HOH A:4669
BINDING SITE FOR RESIDUE EDO A2461
34
DC7
SOFTWARE
HOH A:4199 , HOH A:4670
BINDING SITE FOR RESIDUE EDO A2462
35
DC8
SOFTWARE
ASN A:637 , ASP A:641 , GLY A:642 , PRO A:1049 , HOH A:4126
BINDING SITE FOR RESIDUE EDO A2463
36
DC9
SOFTWARE
TRP A:1358 , THR A:1359 , ASP A:1360 , SER A:1361 , LYS A:1362
BINDING SITE FOR RESIDUE EDO A2464
37
EC1
SOFTWARE
ASP A:959 , THR A:993 , THR A:994 , HOH A:4055 , HOH A:4099
BINDING SITE FOR RESIDUE EDO A2465
38
EC2
SOFTWARE
ASN A:1388 , ALA A:1389 , HOH A:3012 , HOH A:4672
BINDING SITE FOR RESIDUE EDO A2466
39
EC3
SOFTWARE
MET A:616 , PHE A:618 , HIS A:657 , ASP A:658 , GLU A:699 , TRP A:724 , TRP A:726 , ASN A:764 , VAL A:765 , GLU A:796 , TRP A:867 , GLN A:868 , ASP A:1254 , SER A:2435 , HOH A:3524 , HOH A:3587 , HOH A:3588 , HOH A:3852 , HOH A:3948 , HOH A:4356 , HOH A:4643 , HOH A:4644
BINDING SITE FOR POLY-SACCHARIDE RESIDUES GAL A2433 THROUGH A2G A2434 BOUND TO SER A2435
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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