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5A57
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (225 KB)
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(1)
Title
:
THE STRUCTURE OF GH101 FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH PUGT
Authors
:
K. J. Gregg, M. D. L. Suits, L. Deng, D. J. Vocadlo, A. B. Boraston
Date
:
16 Jun 15 (Deposition) - 02 Sep 15 (Release) - 28 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Endo-Beta-N-Acetylgalactosaminidase, Glycoside Hydrolase Family 101, Gh101, T-Antigen, Mucin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. J. Gregg, M. D. L. Suits, L. Deng, D. J. Vocadlo, A. B. Boraston
Structural Analysis Of A Family 101 Glycoside Hydrolase In Complex With Carbohydrates Reveals Insights Into Its Mechanism.
J. Biol. Chem. V. 290 25657 2015
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Hetero Components
(5, 30)
Info
All Hetero Components
1a: (Z)-[(3R,4R,5R,6R)-3-ACETAMIDO-6-(... (5G0a)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: CITRIC ACID (CITa)
3b: CITRIC ACID (CITb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
4q: 1,2-ETHANEDIOL (EDOq)
4r: 1,2-ETHANEDIOL (EDOr)
4s: 1,2-ETHANEDIOL (EDOs)
4t: 1,2-ETHANEDIOL (EDOt)
4u: 1,2-ETHANEDIOL (EDOu)
4v: 1,2-ETHANEDIOL (EDOv)
4w: 1,2-ETHANEDIOL (EDOw)
5a: BETA-D-GALACTOSE (GALa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5G0
1
Ligand/Ion
(Z)-[(3R,4R,5R,6R)-3-ACETAMIDO-6-(HYDROXYMETHYL)-4,5-BIS(OXIDANYL)OXAN-2-YLIDENE]AMINO]PHENYLCARBAMATE
2
CA
3
Ligand/Ion
CALCIUM ION
3
CIT
2
Ligand/Ion
CITRIC ACID
4
EDO
23
Ligand/Ion
1,2-ETHANEDIOL
5
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
[
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]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:577 , ASN A:579 , ASP A:581 , ASN A:583 , ASP A:588 , HOH A:3567
BINDING SITE FOR RESIDUE CA A2428
02
AC2
SOFTWARE
GLU A:703 , ASP A:728 , HIS A:1258 , HOH A:3760 , HOH A:3892 , HOH A:3893
BINDING SITE FOR RESIDUE CA A2429
03
AC3
SOFTWARE
ASP A:1233 , GLU A:1235 , GLU A:1281 , TRP A:1284 , ASP A:1411 , HOH A:4762
BINDING SITE FOR RESIDUE CA A2430
04
AC4
SOFTWARE
SER A:1127 , ASN A:1128 , GLY A:1200 , ASP A:1201 , GLU A:1202 , HOH A:4588 , HOH A:4596 , HOH A:4997 , HOH A:4998
BINDING SITE FOR RESIDUE CIT A2431
05
AC5
SOFTWARE
THR A:1162 , ARG A:1163 , ARG A:1164 , HOH A:4660 , HOH A:4669 , HOH A:4670 , HOH A:4677 , HOH A:4784 , HOH A:4999 , HOH A:5000 , HOH A:5001
BINDING SITE FOR RESIDUE CIT A2432
06
AC6
SOFTWARE
LYS A:635 , PHE A:864 , ASN A:1090 , EDO A:2446 , HOH A:3705 , HOH A:4173 , HOH A:4535 , HOH A:5005
BINDING SITE FOR RESIDUE EDO A2434
07
AC7
SOFTWARE
ASP A:416 , ASN A:417 , ASP A:1187 , HOH A:4621 , HOH A:5007
BINDING SITE FOR RESIDUE EDO A2435
08
AC8
SOFTWARE
ASN A:637 , ASP A:641 , GLY A:642 , LYS A:1016 , PRO A:1049 , HOH A:3715 , HOH A:3718 , HOH A:3720 , HOH A:4402
BINDING SITE FOR RESIDUE EDO A2436
09
AC9
SOFTWARE
SER A:336 , ASP A:416 , GLU A:1139 , GLY A:1185 , HOH A:4619
BINDING SITE FOR RESIDUE EDO A2437
10
BC1
SOFTWARE
GLY A:362 , GLN A:363 , VAL A:364 , GLN A:365 , SER A:457 , GLU A:534 , VAL A:536 , TYR A:541
BINDING SITE FOR RESIDUE EDO A2438
11
BC2
SOFTWARE
TYR A:563 , LYS A:784 , LYS A:788 , HOH A:4090 , HOH A:5009 , HOH A:5010
BINDING SITE FOR RESIDUE EDO A2439
12
BC3
SOFTWARE
GLY A:869 , ARG A:1163 , EDO A:2441 , HOH A:4175 , HOH A:4176 , HOH A:4179 , HOH A:4183 , HOH A:4672 , HOH A:4675 , HOH A:5011
BINDING SITE FOR RESIDUE EDO A2440
13
BC4
SOFTWARE
ASP A:863 , ARG A:870 , SER A:871 , ASP A:872 , EDO A:2440 , HOH A:4171 , HOH A:4179 , HOH A:4672 , HOH A:4680
BINDING SITE FOR RESIDUE EDO A2441
14
BC5
SOFTWARE
THR A:382 , GLU A:392 , HOH A:5012
BINDING SITE FOR RESIDUE EDO A2442
15
BC6
SOFTWARE
LYS A:607 , HIS A:835 , GLN A:891 , HOH A:5013 , HOH A:5014
BINDING SITE FOR RESIDUE EDO A2443
16
BC7
SOFTWARE
GLN A:462 , THR A:463 , ASP A:505 , LYS A:506 , HOH A:3274 , HOH A:5015 , HOH A:5016
BINDING SITE FOR RESIDUE EDO A2444
17
BC8
SOFTWARE
GLN A:1096 , HOH A:4516 , HOH A:4519
BINDING SITE FOR RESIDUE EDO A2445
18
BC9
SOFTWARE
LYS A:635 , TYR A:873 , ASP A:1013 , LYS A:1085 , ALA A:1089 , ASP A:1091 , EDO A:2434 , HOH A:4196
BINDING SITE FOR RESIDUE EDO A2446
19
CC1
SOFTWARE
TRP A:724 , ASN A:725 , HOH A:3963 , HOH A:5017 , HOH A:5018
BINDING SITE FOR RESIDUE EDO A2447
20
CC2
SOFTWARE
VAL A:674 , GLU A:675 , LYS A:678 , HOH A:3794 , HOH A:5020 , HOH A:5021 , HOH A:5022
BINDING SITE FOR RESIDUE EDO A2448
21
CC3
SOFTWARE
ASN A:374 , HIS A:375 , ARG A:376 , HOH A:3106
BINDING SITE FOR RESIDUE EDO A2449
22
CC4
SOFTWARE
HIS A:639 , ASN A:874 , LEU A:1011 , GLN A:1037 , PRO A:1038 , HOH A:5023
BINDING SITE FOR RESIDUE EDO A2450
23
CC5
SOFTWARE
PHE A:450 , ASN A:453 , HIS A:545 , SER A:546 , HOH A:3061
BINDING SITE FOR RESIDUE EDO A2451
24
CC6
SOFTWARE
ASN A:768 , TRP A:797 , HIS A:799 , HOH A:4127 , HOH A:5025
BINDING SITE FOR RESIDUE EDO A2452
25
CC7
SOFTWARE
ASN A:417 , GLN A:418 , SER A:595 , HOH A:3555 , HOH A:5026
BINDING SITE FOR RESIDUE EDO A2453
26
CC8
SOFTWARE
ALA A:882 , GLN A:958 , TYR A:963 , THR A:988 , HOH A:4164 , HOH A:4204 , HOH A:4321 , HOH A:4359
BINDING SITE FOR RESIDUE EDO A2454
27
CC9
SOFTWARE
TYR A:1009 , LYS A:1016 , THR A:1017 , GLN A:1046 , HOH A:4404 , HOH A:4450 , HOH A:5027
BINDING SITE FOR RESIDUE EDO A2455
28
DC1
SOFTWARE
TYR A:1179 , PHE A:1181 , VAL A:1237 , ALA A:1238 , GLN A:1239 , PHE A:1242 , HOH A:4737
BINDING SITE FOR RESIDUE EDO A2456
29
DC2
SOFTWARE
MET A:616 , HIS A:657 , ASP A:658 , GLU A:699 , TRP A:724 , TRP A:726 , ASP A:764 , VAL A:765 , ASN A:768 , GLU A:796 , TRP A:797 , GLN A:868 , ASP A:1254 , HOH A:3642 , HOH A:3728 , HOH A:4059 , HOH A:4065 , HOH A:4611 , HOH A:4663 , HOH A:5002 , HOH A:5004
BINDING SITE FOR POLY-SACCHARIDE RESIDUES 5G0 A2433 THROUGH GAL A2457
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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