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5A56
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (216 KB)
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(1)
Title
:
THE STRUCTURE OF GH101 FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH 1-O-METHYL-T-ANTIGEN
Authors
:
K. J. Gregg, M. D. L. Suits, L. Deng, D. J. Vocadlo, A. B. Boraston
Date
:
16 Jun 15 (Deposition) - 02 Sep 15 (Release) - 28 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Endo-Beta-N-Acetylgalactosaminidase, Glycoside Hydrolase Family 101, Gh101, T-Antigen, Mucin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. J. Gregg, M. D. L. Suits, L. Deng, D. J. Vocadlo, A. B. Boraston
Structural Analysis Of A Family 101 Glycoside Hydrolase In Complex With Carbohydrates Reveals Insights Into Its Mechanism.
J. Biol. Chem. V. 290 25657 2015
[
close entry info
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Hetero Components
(6, 39)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
3a: 1,2-ETHANEDIOL (EDOa)
3aa: 1,2-ETHANEDIOL (EDOaa)
3ab: 1,2-ETHANEDIOL (EDOab)
3ac: 1,2-ETHANEDIOL (EDOac)
3ad: 1,2-ETHANEDIOL (EDOad)
3ae: 1,2-ETHANEDIOL (EDOae)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
3y: 1,2-ETHANEDIOL (EDOy)
3z: 1,2-ETHANEDIOL (EDOz)
4a: BETA-D-GALACTOSE (GALa)
5a: ALPHA-METHYL-N-ACETYL-D-GALACTOSAM... (MGCa)
6a: MANGANESE (II) ION (MNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
CIT
2
Ligand/Ion
CITRIC ACID
3
EDO
31
Ligand/Ion
1,2-ETHANEDIOL
4
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
5
MGC
1
Ligand/Ion
ALPHA-METHYL-N-ACETYL-D-GALACTOSAMINE
6
MN
1
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:577 , ASN A:579 , ASP A:581 , ASN A:583 , ASP A:588 , HOH A:3413
BINDING SITE FOR RESIDUE CA A2427
02
AC2
SOFTWARE
GLU A:703 , ASP A:728 , HIS A:1258 , HOH A:3561 , HOH A:3652 , HOH A:3653
BINDING SITE FOR RESIDUE MN A2428
03
AC3
SOFTWARE
ASP A:1233 , GLU A:1235 , GLU A:1281 , TRP A:1284 , ASP A:1411 , HOH A:4332
BINDING SITE FOR RESIDUE CA A2429
04
AC4
SOFTWARE
GLY A:1063 , ASN A:1090 , ASP A:1091 , ASP A:1207 , HOH A:4097 , HOH A:4098
BINDING SITE FOR RESIDUE CA A2430
05
AC5
SOFTWARE
THR A:1162 , ARG A:1163 , ARG A:1164 , HOH A:4251 , HOH A:4256 , HOH A:4257 , HOH A:4258 , HOH A:4352 , HOH A:4511 , HOH A:4512 , HOH A:4513
BINDING SITE FOR RESIDUE CIT A2431
06
AC6
SOFTWARE
SER A:1127 , ASN A:1128 , GLY A:1200 , ASP A:1201 , GLU A:1202 , HOH A:4191 , HOH A:4286 , HOH A:4287 , HOH A:4514
BINDING SITE FOR RESIDUE CIT A2432
07
AC7
SOFTWARE
GLN A:462 , THR A:463 , ASP A:505 , LYS A:506 , HOH A:3193 , HOH A:4516 , HOH A:4517
BINDING SITE FOR RESIDUE EDO A2465
08
AC8
SOFTWARE
ASP A:1233 , ASN A:1412 , LEU A:1413 , GLN A:1414 , HOH A:4336 , HOH A:4498 , HOH A:4518
BINDING SITE FOR RESIDUE EDO A2435
09
AC9
SOFTWARE
GLU A:323 , SER A:1324 , ASP A:1325 , ASN A:1391 , ARG A:1393 , HOH A:4433 , HOH A:4435
BINDING SITE FOR RESIDUE EDO A2436
10
BC1
SOFTWARE
LYS A:607 , HIS A:835 , GLN A:891 , HOH A:4519
BINDING SITE FOR RESIDUE EDO A2437
11
BC2
SOFTWARE
ASP A:416 , ASN A:417 , ASP A:1187 , HOH A:4214 , HOH A:4215 , HOH A:4520
BINDING SITE FOR RESIDUE EDO A2438
12
BC3
SOFTWARE
ASP A:482 , LYS A:495 , HOH A:3251 , HOH A:3254
BINDING SITE FOR RESIDUE EDO A2439
13
BC4
SOFTWARE
LYS A:556 , HOH A:4521 , HOH A:4522 , HOH A:4523
BINDING SITE FOR RESIDUE EDO A2440
14
BC5
SOFTWARE
LYS A:635 , TYR A:873 , ASP A:1013 , LYS A:1085 , ALA A:1089 , ASP A:1091 , EDO A:2454 , HOH A:3520 , HOH A:3521
BINDING SITE FOR RESIDUE EDO A2441
15
BC6
SOFTWARE
HIS A:639 , ASN A:874 , GLN A:1037 , PRO A:1038 , HOH A:3529 , HOH A:4524
BINDING SITE FOR RESIDUE EDO A2442
16
BC7
SOFTWARE
SER A:336 , VAL A:415 , ASP A:416 , GLY A:1185 , HOH A:3171 , HOH A:4525
BINDING SITE FOR RESIDUE EDO A2443
17
BC8
SOFTWARE
THR A:382 , GLU A:392 , LEU A:394 , HOH A:3091
BINDING SITE FOR RESIDUE EDO A2444
18
BC9
SOFTWARE
GLY A:362 , GLN A:363 , VAL A:364 , GLN A:365 , SER A:457 , GLU A:534
BINDING SITE FOR RESIDUE EDO A2445
19
CC1
SOFTWARE
TYR A:1179 , PHE A:1181 , VAL A:1237 , ALA A:1238 , GLN A:1239 , PHE A:1242 , HOH A:4312
BINDING SITE FOR RESIDUE EDO A2446
20
CC2
SOFTWARE
PRO A:702 , ASP A:728 , GLN A:729 , ASP A:1278 , LYS A:1287 , HOH A:3649 , HOH A:4396
BINDING SITE FOR RESIDUE EDO A2447
21
CC3
SOFTWARE
TYR A:853 , ALA A:882 , GLN A:958 , HOH A:3885 , HOH A:3886 , HOH A:3971
BINDING SITE FOR RESIDUE EDO A2448
22
CC4
SOFTWARE
ASN A:417 , GLN A:418 , VAL A:573 , SER A:595 , HOH A:3401
BINDING SITE FOR RESIDUE EDO A2449
23
CC5
SOFTWARE
PHE A:450 , ASN A:453 , HIS A:545 , SER A:546 , HOH A:3047
BINDING SITE FOR RESIDUE EDO A2450
24
CC6
SOFTWARE
GLN A:413 , ASN A:1114 , THR A:1183 , EDO A:2453 , HOH A:4527
BINDING SITE FOR RESIDUE EDO A2451
25
CC7
SOFTWARE
TRP A:512 , LYS A:571 , ILE A:596
BINDING SITE FOR RESIDUE EDO A2452
26
CC8
SOFTWARE
GLN A:413 , HIS A:420 , ASP A:422 , ASN A:1114 , EDO A:2451 , HOH A:3398
BINDING SITE FOR RESIDUE EDO A2453
27
CC9
SOFTWARE
TYR A:873 , ALA A:1089 , EDO A:2441 , HOH A:3520 , HOH A:3859 , HOH A:4143 , HOH A:4529 , HOH A:4530
BINDING SITE FOR RESIDUE EDO A2454
28
DC1
SOFTWARE
GLN A:1020 , THR A:1030 , ASP A:1032 , HOH A:4061
BINDING SITE FOR RESIDUE EDO A2455
29
DC2
SOFTWARE
THR A:1073 , LYS A:1107 , THR A:1192 , HOH A:4279
BINDING SITE FOR RESIDUE EDO A2456
30
DC3
SOFTWARE
GLY A:521 , GLY A:522 , ASP A:525 , HIS A:799 , HOH A:3321 , HOH A:4531
BINDING SITE FOR RESIDUE EDO A2457
31
DC4
SOFTWARE
TYR A:889 , ASN A:929 , LEU A:952 , ASN A:968 , HOH A:3976 , HOH A:3979
BINDING SITE FOR RESIDUE EDO A2458
32
DC5
SOFTWARE
TYR A:563 , LYS A:784 , LYS A:788 , HOH A:4532 , HOH A:4533 , HOH A:4534
BINDING SITE FOR RESIDUE EDO A2459
33
DC6
SOFTWARE
ASN A:637 , ASP A:641 , PRO A:1049 , HOH A:3523 , HOH A:4038
BINDING SITE FOR RESIDUE EDO A2461
34
DC7
SOFTWARE
TRP A:1358 , THR A:1359 , ASP A:1360 , SER A:1361 , LYS A:1362 , HOH A:4535
BINDING SITE FOR RESIDUE EDO A2462
35
DC8
SOFTWARE
THR A:993 , THR A:994 , TRP A:995
BINDING SITE FOR RESIDUE EDO A2463
36
DC9
SOFTWARE
PRO A:322 , ASN A:1388 , ALA A:1389 , HOH A:3008 , HOH A:4536
BINDING SITE FOR RESIDUE EDO A2464
37
EC1
SOFTWARE
TRP A:724 , TRP A:726 , LYS A:1156 , GLU A:1253 , ASP A:1254 , HOH A:4515
BINDING SITE FOR POLY-SACCHARIDE RESIDUES MGC A2433 THROUGH GAL A2434
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (224 KB)
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