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5A4F
Asym. Unit
Info
Asym.Unit (593 KB)
Biol.Unit 1 (582 KB)
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(1)
Title
:
THE MECHANISM OF HYDROGEN ACTIVATION BY NIFE-HYDROGENASES.
Authors
:
R. M. Evans, E. J. Brooke, S. A. M. Wehlin, E. Nomerotskaia, F. Sargent, S S. E. V. Phillips, F. A. Armstrong
Date
:
09 Jun 15 (Deposition) - 25 Nov 15 (Release) - 13 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : L,M,S,T
Biol. Unit 1: L,M,S,T (1x)
Keywords
:
Oxidoreductase, Nife-Hydrogenase, Hydrogen Lysis, Redox, Fes Cluster, Catalysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Evans, E. J. Brooke, S. A. Wehlin, E. Nomerotskaia, F. Sargent, S. B. Carr, S. E. Phillips, F. A. Armstrong
Mechanism Of Hydrogen Activation By [Nife] Hydrogenases.
Nat. Chem. Biol. V. 12 46 2016
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Hetero Components
(9, 20)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
3a: FE3-S4 CLUSTER (F3Sa)
3b: FE3-S4 CLUSTER (F3Sb)
4a: CARBONMONOXIDE-(DICYANO) IRON (FCOa)
4b: CARBONMONOXIDE-(DICYANO) IRON (FCOb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: NICKEL (II) ION (NIa)
6b: NICKEL (II) ION (NIb)
7a: FE4-S3 CLUSTER (SF3a)
7b: FE4-S3 CLUSTER (SF3b)
8a: IRON/SULFUR CLUSTER (SF4a)
8b: IRON/SULFUR CLUSTER (SF4b)
9a: SULFATE ION (SO4a)
9b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
F3S
2
Ligand/Ion
FE3-S4 CLUSTER
4
FCO
2
Ligand/Ion
CARBONMONOXIDE-(DICYANO) IRON
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
NI
2
Ligand/Ion
NICKEL (II) ION
7
SF3
2
Ligand/Ion
FE4-S3 CLUSTER
8
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
9
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CSO L:79 , VAL L:82 , HIS L:83 , ALA L:507 , PRO L:508 , ARG L:509 , LEU L:512 , VAL L:530 , PRO L:531 , THR L:532 , CYS L:579 , NI L:602 , HOH L:2071
BINDING SITE FOR RESIDUE FCO L 601
02
AC2
SOFTWARE
CYS L:76 , CSO L:79 , CYS L:576 , CYS L:579 , FCO L:601 , HOH L:2071
BINDING SITE FOR RESIDUE NI L 602
03
AC3
SOFTWARE
GLU L:57 , CYS L:528 , HIS L:582 , HOH L:2050 , HOH L:2051 , HOH L:2263
BINDING SITE FOR RESIDUE MG L 603
04
AC4
SOFTWARE
CSO M:79 , VAL M:82 , HIS M:83 , ALA M:507 , PRO M:508 , ARG M:509 , LEU M:512 , VAL M:530 , PRO M:531 , THR M:532 , CYS M:579 , NI M:602 , HOH M:2074
BINDING SITE FOR RESIDUE FCO M 601
05
AC5
SOFTWARE
CYS M:76 , CSO M:79 , CYS M:576 , CYS M:579 , FCO M:601 , HOH M:2074
BINDING SITE FOR RESIDUE NI M 602
06
AC6
SOFTWARE
GLU M:57 , CYS M:528 , HIS M:582 , HOH M:2050 , HOH M:2051 , HOH M:2269
BINDING SITE FOR RESIDUE MG M 603
07
AC7
SOFTWARE
ARG M:394 , ARG S:125
BINDING SITE FOR RESIDUE SO4 M 604
08
AC8
SOFTWARE
HIS S:187 , CYS S:190 , ARG S:193 , CYS S:215 , LEU S:216 , CYS S:221
BINDING SITE FOR RESIDUE SF4 S 401
09
AC9
SOFTWARE
LYS L:226 , THR S:226 , ASN S:228 , CYS S:230 , TRP S:235 , PRO S:242 , CYS S:249 , LEU S:250 , CYS S:252
BINDING SITE FOR RESIDUE F3S S 402
10
BC1
SOFTWARE
GLU S:16 , CYS S:17 , THR S:18 , CYS S:19 , THR S:114 , CYS S:115 , CYS S:120 , GLY S:148 , CYS S:149 , HOH S:2003
BINDING SITE FOR RESIDUE SF3 S 403
11
BC2
SOFTWARE
TRP S:118 , CYS S:120 , GLY S:256 , HOH S:2046 , HOH S:2048
BINDING SITE FOR RESIDUE CL S 405
12
BC3
SOFTWARE
HOH L:2030 , ILE S:12 , HIS S:13 , ASP S:46 , LYS S:98 , HOH S:2002
BINDING SITE FOR RESIDUE CL S 406
13
BC4
SOFTWARE
GLY L:480 , ASN L:481 , LEU L:482 , ALA L:483 , ARG S:211
BINDING SITE FOR RESIDUE SO4 S 407
14
BC5
SOFTWARE
HIS T:187 , CYS T:190 , ARG T:193 , CYS T:215 , LEU T:216 , CYS T:221
BINDING SITE FOR RESIDUE SF4 T 401
15
BC6
SOFTWARE
LYS M:226 , THR T:226 , ASN T:228 , CYS T:230 , TRP T:235 , PRO T:242 , CYS T:249 , LEU T:250 , CYS T:252
BINDING SITE FOR RESIDUE F3S T 402
16
BC7
SOFTWARE
GLU T:16 , CYS T:17 , THR T:18 , CYS T:19 , THR T:114 , CYS T:115 , CYS T:120 , GLY T:148 , CYS T:149 , HOH T:2005
BINDING SITE FOR RESIDUE SF3 T 403
17
BC8
SOFTWARE
TRP T:118 , CYS T:120 , GLY T:256 , HOH T:2039
BINDING SITE FOR RESIDUE CL T 405
18
BC9
SOFTWARE
ILE T:12 , HIS T:13 , ASP T:46 , LYS T:98
BINDING SITE FOR RESIDUE CL T 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (593 KB)
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Header - Biol.Unit 1
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