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5A3S
Biol. Unit 1
Info
Asym.Unit (688 KB)
Biol.Unit 1 (341 KB)
Biol.Unit 2 (344 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE (SR) CALCIUM ATPASE E2-VANADATE COMPLEX BOUND TO THAPSIGARGIN AND TNP-ATP
Authors
:
J. D. Clausen, M. Bublitz, B. Arnou, C. Olesen, J. P. Andersen, J. V. Moll P. Nissen
Date
:
03 Jun 15 (Deposition) - 13 Apr 16 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Sarco(Endo)Plasmic Reticulum Calcium Atpase, Beryllium Fluoride, P-Type Atpase, Serca, Trinitrophenyl-Nucleotide Analoges, Tnp-Atp, Calcium Transport, Inhibition, Transition State
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. D. Clausen, M. Bublitz, B. Arnou, C. Olesen, J. P. Andersen, J. V. Moller, P. Nissen
Crystal Structure Of The Vanadate-Inhibited Ca(2+)-Atpase.
Structure V. 24 617 2016
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: SPIRO(2,4,6-TRINITROBENZENE[1,2A]-... (128a)
1b: SPIRO(2,4,6-TRINITROBENZENE[1,2A]-... (128b)
2a: ACETYL GROUP (ACEa)
2b: ACETYL GROUP (ACEb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
6a: OCTANOIC ACID [3S-[3ALPHA, 3ABETA,... (TG1a)
6b: OCTANOIC ACID [3S-[3ALPHA, 3ABETA,... (TG1b)
7a: OXIDO(DIOXO)VANADIUM (VN4a)
7b: OXIDO(DIOXO)VANADIUM (VN4b)
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Label:
No.
Name
Count
Type
Full Name
1
128
1
Ligand/Ion
SPIRO(2,4,6-TRINITROBENZENE[1,2A]-2O',3O'-METHYLENE-ADENINE-TRIPHOSPHATE
2
ACE
1
Mod. Amino Acid
ACETYL GROUP
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
K
-1
Ligand/Ion
POTASSIUM ION
5
MG
-1
Ligand/Ion
MAGNESIUM ION
6
TG1
1
Ligand/Ion
OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA,6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OXY]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER
7
VN4
1
Ligand/Ion
OXIDO(DIOXO)VANADIUM
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:259 , LEU A:260 , VAL A:263 , ILE A:765 , VAL A:769 , VAL A:773 , LEU A:828 , ILE A:829 , PHE A:834 , TYR A:837 , MET A:838
BINDING SITE FOR RESIDUE TG1 A1000
2
AC2
SOFTWARE
GLY A:182 , ASP A:351 , LYS A:352 , THR A:353 , THR A:625 , GLY A:626 , LYS A:684 , ASN A:706 , MG A:1003 , HOH A:2001 , HOH A:2002 , HOH A:2003
BINDING SITE FOR RESIDUE VN4 A1001
3
AC3
SOFTWARE
VAL A:185 , SER A:186 , VAL A:187 , LYS A:205 , MET A:361 , THR A:441 , PHE A:487 , MET A:494 , LYS A:515 , GLY A:516 , ALA A:517 , ARG A:560 , ASN A:628 , MG A:1004 , HOH A:2004
BINDING SITE FOR RESIDUE 128 A1002
4
AC4
SOFTWARE
ASP A:351 , THR A:353 , ASP A:703 , VN4 A:1001 , HOH A:2001 , HOH A:2003
BINDING SITE FOR RESIDUE MG A1003
5
AC5
SOFTWARE
ASN A:628 , 128 A:1002 , HOH A:2004
BINDING SITE FOR RESIDUE MG A1004
6
AC6
SOFTWARE
GLN A:244 , LEU A:711 , LYS A:712 , ALA A:714 , GLU A:732
BINDING SITE FOR RESIDUE K A1008
7
AC7
SOFTWARE
ASN A:628 , LYS A:629 , ARG A:678
BINDING SITE FOR RESIDUE CL A1009
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (688 KB)
Header - Asym.Unit
Biol.Unit 1 (341 KB)
Header - Biol.Unit 1
Biol.Unit 2 (344 KB)
Header - Biol.Unit 2
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