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5A3N
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PLU-1 (JARID1B) IN COMPLEX WITH KDOAM25A
Authors
:
V. Srikannathasan, C. Johansson, C. Gileadi, A. Nuzzi, G. F. Ruda, J. Ko Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, P. Brennan, U. Opperm
Date
:
02 Jun 15 (Deposition) - 08 Jul 15 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Tumber, A. Nuzzi, E. S. Hookway, S. B. Hatch, S. Velupillai, C. Johansson, A. Kawamura, P. Savitsky, C. Yapp, A. Szykowska, N. Wu, C. Bountra, C. Strain-Damerell, N. A. Burgess-Brown, G. F. Ruda, O. Fedorov, S. Munro, K. S. England, R. P. Nowak, C. J. Schofield, N. B. La Thangue, C. Pawlyn, F. Davies, G. Morgan, N. Athanasou, S. Muller, U. Oppermann, P. E. Brennan
Potent And Selective Kdm5 Inhibitor Stops Cellular Demethylation Of H3K4Me3 At Transcription Start Sites And Proliferation Of Mm1S Myeloma Cells.
Cell Chem Biol V. 24 371 2017
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Hetero Components
(7, 15)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
4a: 2-[[[2-[2-(DIMETHYLAMINO)ETHYL-ETH... (LQTa)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
5c: MANGANESE (II) ION (MNc)
6a: PHOSPHATE ION (PO4a)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
LQT
1
Ligand/Ion
2-[[[2-[2-(DIMETHYLAMINO)ETHYL-ETHYL-AMINO]-2-OXIDANYLIDENE-ETHYL]AMINO]METHYL]PYRIDINE-4-CARBOXAMIDE
5
MN
3
Ligand/Ion
MANGANESE (II) ION
6
PO4
1
Ligand/Ion
PHOSPHATE ION
7
ZN
2
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:692 , CYS A:695 , CYS A:715 , HIS A:718
BINDING SITE FOR RESIDUE ZN A 1754
02
AC2
SOFTWARE
CYS A:706 , CYS A:708 , CYS A:723 , CYS A:725
BINDING SITE FOR RESIDUE ZN A 1755
03
AC3
SOFTWARE
LEU A:90 , ASN A:91 , LEU A:413 , THR A:416 , GLU A:419
BINDING SITE FOR RESIDUE MN A 1756
04
AC4
SOFTWARE
GLU A:678 , ARG A:735 , HOH A:2399
BINDING SITE FOR RESIDUE MN A 1757
05
AC5
SOFTWARE
HIS A:499 , GLU A:501 , HIS A:587 , LQT A:1759 , HOH A:2210
BINDING SITE FOR RESIDUE MN A 1758
06
AC6
SOFTWARE
ARG A:98 , TYR A:425 , TRP A:486 , TYR A:488 , PHE A:496 , HIS A:499 , GLU A:501 , LYS A:517 , TRP A:519 , HIS A:587 , VAL A:600 , ASN A:601 , MN A:1758 , DMS A:1760 , HOH A:2100 , HOH A:2210 , HOH A:2216 , HOH A:2230
BINDING SITE FOR RESIDUE LQT A 1759
07
AC7
SOFTWARE
ARG A:98 , TYR A:425 , TYR A:488 , LQT A:1759 , HOH A:2100 , HOH A:2400
BINDING SITE FOR RESIDUE DMS A 1760
08
AC8
SOFTWARE
HIS A:622 , LYS A:694 , HIS A:718 , HOH A:2300 , HOH A:2304
BINDING SITE FOR RESIDUE PO4 A 1761
09
AC9
SOFTWARE
ILE A:500 , TRP A:504 , GLU A:531 , MET A:534 , LEU A:541 , PHE A:542 , LEU A:552 , VAL A:553 , TYR A:586 , HIS A:617 , TYR A:618 , LEU A:621 , ARG A:623 , HOH A:2203 , HOH A:2204 , HOH A:2209 , HOH A:2253 , HOH A:2401
BINDING SITE FOR RESIDUE EPE A 1762
10
BC1
SOFTWARE
ASP A:688 , GLU A:689 , ARG A:690 , GLN A:691 , VAL A:693 , GLY A:711 , LEU A:712 , LEU A:713 , HOH A:2403
BINDING SITE FOR RESIDUE EDO A 1763
11
BC2
SOFTWARE
ARG A:670 , VAL A:674 , ILE A:675 , HOH A:2336 , HOH A:2345
BINDING SITE FOR RESIDUE EDO A 1764
12
BC3
SOFTWARE
ALA A:386 , ASP A:387 , LYS A:390 , MET A:491 , CYS A:492 , GLU A:515 , GLY A:593 , PHE A:594
BINDING SITE FOR RESIDUE EDO A 1765
13
BC4
SOFTWARE
PHE A:74 , ALA A:75 , CYS A:76 , GLY A:435 , SER A:436
BINDING SITE FOR RESIDUE EDO A 1766
14
BC5
SOFTWARE
HOH A:2369
BINDING SITE FOR RESIDUE EDO A 1767
15
BC6
SOFTWARE
LYS A:639 , GLU A:678 , LYS A:731 , HOH A:2404
BINDING SITE FOR RESIDUE EDO A 1768
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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