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5A1L
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLASE UTY WITH S21056A
Authors
:
V. Srikannathasan, C. Gileadi, C. Johansson, T. Krojer, A. Tumber, F. V C. H. Arrowsmith, C. Bountra, A. Edwards, P. Brennan, U. Oppermann
Date
:
01 May 15 (Deposition) - 17 Jun 15 (Release) - 17 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Srikannathasan, C. Gileadi, C. Johansson, T. Krojer, A. Tumber, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, P. Brennan, U. Oppermann
Crystal Structure Of Jmjc Domain Of Human Histone Demethylase Uty With S21056A
To Be Published
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
3a: 3-[[2-PYRIDIN-2-YL-6-(1,2,4,5-TETR... (S2Ia)
3b: 3-[[2-PYRIDIN-2-YL-6-(1,2,4,5-TETR... (S2Ib)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
FE2
2
Ligand/Ion
FE (II) ION
3
S2I
2
Ligand/Ion
3-[[2-PYRIDIN-2-YL-6-(1,2,4,5-TETRAHYDRO-3-BENZAZEPIN-3-YL)PYRIMIDIN-4-YL]AMINO]PROPAN-1-OL
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:1014 , GLU A:1016 , S2I A:2267 , HOH A:3001 , HOH A:3002
BINDING SITE FOR RESIDUE FE2 A 1
02
AC2
SOFTWARE
CYS A:1199 , CYS A:1202 , CYS A:1226 , CYS A:1229
BINDING SITE FOR RESIDUE ZN A4002
03
AC3
SOFTWARE
HIS B:1014 , GLU B:1016 , S2I B:2267 , HOH B:3001 , HOH B:3002
BINDING SITE FOR RESIDUE FE2 B 1
04
AC4
SOFTWARE
CYS B:1199 , CYS B:1202 , CYS B:1226 , CYS B:1229
BINDING SITE FOR RESIDUE ZN B4002
05
AC5
SOFTWARE
FE2 A:1 , ARG A:869 , THR A:954 , TYR A:1003 , LYS A:1005 , ARG A:1010 , THR A:1011 , PRO A:1012 , HIS A:1014 , GLU A:1016 , ASN A:1017 , ASN A:1024 , ASN A:1104 , HOH A:3002
BINDING SITE FOR RESIDUE S2I A2267
06
AC6
SOFTWARE
FE2 B:1 , ARG B:869 , SER B:893 , THR B:954 , ASN B:955 , TYR B:1003 , LYS B:1005 , ARG B:1010 , THR B:1011 , PRO B:1012 , HIS B:1014 , GLU B:1016 , ASN B:1017 , ASN B:1024 , ASN B:1104 , HOH B:3001 , HOH B:3002
BINDING SITE FOR RESIDUE S2I B2267
07
AC7
SOFTWARE
THR A:829 , ASN A:1089 , ALA A:1090 , THR A:1113 , CYS A:1115 , HOH A:3207
BINDING SITE FOR RESIDUE EDO A2268
08
AC8
SOFTWARE
PHE A:911 , GLY B:840 , ASP B:1084 , HOH B:3022 , HOH B:3186
BINDING SITE FOR RESIDUE EDO B2268
09
AC9
SOFTWARE
ILE B:888 , TRP B:889 , ARG B:890 , HOH B:3331
BINDING SITE FOR RESIDUE EDO B2269
10
BC1
SOFTWARE
SER A:853 , THR A:854 , GLN A:907 , GLY A:1028 , PRO A:1029 , ASN A:1103 , EDO A:2270 , HOH A:3037
BINDING SITE FOR RESIDUE EDO A2269
11
BC2
SOFTWARE
GLN A:907 , PHE A:911 , EDO A:2269 , HOH A:3088
BINDING SITE FOR RESIDUE EDO A2270
12
BC3
SOFTWARE
ASN A:805 , ARG A:1077 , GLU B:920
BINDING SITE FOR RESIDUE EDO A2271
13
BC4
SOFTWARE
HIS A:1188 , HIS A:1197 , TYR A:1222
BINDING SITE FOR RESIDUE EDO A2272
14
BC5
SOFTWARE
GLY A:840 , ALA A:842 , GLY A:843 , PRO A:1082 , GLY A:1083 , ASP A:1084 , HOH A:3206
BINDING SITE FOR RESIDUE EDO A2273
15
BC6
SOFTWARE
TYR A:812 , LEU A:813 , GLU A:814 , ARG A:839 , GLY A:840 , HOH A:3206 , PHE B:911 , GLN B:912
BINDING SITE FOR RESIDUE EDO A2274
16
BC7
SOFTWARE
LEU A:971 , THR A:972 , ARG A:979 , VAL A:980 , VAL A:981 , HOH A:3127 , HOH A:3347
BINDING SITE FOR RESIDUE EDO A2275
17
BC8
SOFTWARE
ILE A:888 , TRP A:889 , ARG A:890 , ASN A:1052 , HOH A:3204 , HOH A:3348
BINDING SITE FOR RESIDUE EDO A2276
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Asym.Unit (165 KB)
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