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Asym. Unit
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Asym.Unit (340 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (113 KB)
Biol.Unit 3 (109 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF I-DMOI E117A IN COMPLEX WITH ITS TARGET DNA AND IN THE PRESENCE OF 2MM MN
Authors
:
R. Molina, N. Besker, J. Prieto, G. Montoya, M. D'Abramo
Date
:
23 Apr 15 (Deposition) - 11 May 16 (Release) - 11 May 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: D,E,F (1x)
Biol. Unit 2: A,B,C (1x)
Biol. Unit 3: G,H,I (1x)
Keywords
:
Hydrolase-Dna Complex, Gene Targeting, Genetics, Protein-Dna Interaction, Homing Endonucleases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Molina, N. Besker, J. Prieto, G. Montoya, M. D'Abramo
Structural And Dynamical Characterization Of The I- Dmo Catalytic Activity
To Be Published
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
CL
7
Ligand/Ion
CHLORIDE ION
3
MN
6
Ligand/Ion
MANGANESE (II) ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:66
BINDING SITE FOR RESIDUE CL A1187
02
AC2
SOFTWARE
LYS A:111 , LEU A:182 , ASN A:183
BINDING SITE FOR RESIDUE ACT A1188
03
AC3
SOFTWARE
HOH A:2009
BINDING SITE FOR RESIDUE CL A1300
04
AC4
SOFTWARE
ALA A:117 , HOH A:2007 , DC C:15 , DC C:16
BINDING SITE FOR RESIDUE ACT C1026
05
AC5
SOFTWARE
DG B:23 , DG C:4 , DC C:5
BINDING SITE FOR RESIDUE ACT C1027
06
AC6
SOFTWARE
TYR D:114 , HOH D:2073
BINDING SITE FOR RESIDUE CL D1196
07
AC7
SOFTWARE
DG F:4 , DC F:5
BINDING SITE FOR RESIDUE CL F1026
08
AC8
SOFTWARE
HOH D:2005 , DG E:15 , DC F:15 , DC F:16
BINDING SITE FOR RESIDUE ACT F1027
09
AC9
SOFTWARE
DG H:6
BINDING SITE FOR RESIDUE CL H1026
10
BC1
SOFTWARE
GLY G:20 , ALA G:117 , HOH G:2006 , DG H:15 , DC I:15 , DC I:16 , HOH I:2010
BINDING SITE FOR RESIDUE ACT I1026
11
BC2
SOFTWARE
DG B:15 , HOH B:2018 , HOH B:2019 , HOH B:2020 , HOH B:2043 , DC C:15
BINDING SITE FOR RESIDUE MN B1026
12
BC3
SOFTWARE
ASP A:21 , ALA A:116 , HOH A:2008 , DA B:14 , DC C:16
BINDING SITE FOR RESIDUE MN A1189
13
BC4
SOFTWARE
ASP D:21 , ALA D:116 , HOH D:2007 , DA E:14 , DC F:16
BINDING SITE FOR RESIDUE MN D1197
14
BC5
SOFTWARE
DG E:15 , HOH E:2006 , HOH E:2007 , HOH E:2008 , DC F:15 , HOH F:2006
BINDING SITE FOR RESIDUE MN F1028
15
BC6
SOFTWARE
ASP G:21 , ALA G:116 , HOH G:2007 , DA H:14 , DC I:16
BINDING SITE FOR RESIDUE MN G1183
16
BC7
SOFTWARE
DG H:15 , HOH H:2008 , HOH H:2009 , HOH H:2010 , HOH H:2019 , DC I:15
BINDING SITE FOR RESIDUE MN H1027
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (340 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 2 (113 KB)
Header - Biol.Unit 2
Biol.Unit 3 (109 KB)
Header - Biol.Unit 3
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