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4ZYQ
Biol. Unit 2
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Asym.Unit (1013 KB)
Biol.Unit 1 (507 KB)
Biol.Unit 2 (505 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M17 IN COMPLEX WITH HYDROXAMIC ACID-BASED INHIBITOR 10S
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
22 May 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Hydroxamic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, N. B. Vinh, S. N. Mistry, R. S. Bamert, C. Ruggeri, J. P. Holleran, S. Loganathan, A. Paiardini, S. A. Charman, A. K. Powell, V. M. Avery, S. Mcgowan, P. J. Scammells
Potent Dual Inhibitors Of Plasmodium Falciparum M1 And M17 Aminopeptidases Through Optimization Of S1 Pocket Interactions.
Eur. J. Med. Chem. V. 110 43 2016
[
close entry info
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Hetero Components
(4, 25)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
2a: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6a)
2b: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6b)
2c: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6c)
2d: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6d)
2e: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6e)
2f: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6f)
2g: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6g)
2h: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6h)
2i: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6i)
2j: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6j)
2k: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6k)
2l: N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'... (4U6l)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
9
Ligand/Ion
PENTAETHYLENE GLYCOL
2
4U6
6
Ligand/Ion
N-{(1R)-2-(HYDROXYAMINO)-1-[3'-(N'-HYDROXYCARBAMIMIDOYL)BIPHENYL-4-YL]-2-OXOETHYL}-2,2-DIMETHYLPROPANAMIDE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
SO4
4
Ligand/Ion
SULFATE ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AG4 (SOFTWARE)
02: AG5 (SOFTWARE)
03: AG6 (SOFTWARE)
04: AG7 (SOFTWARE)
05: AG8 (SOFTWARE)
06: AG9 (SOFTWARE)
07: AH1 (SOFTWARE)
08: AH2 (SOFTWARE)
09: AH3 (SOFTWARE)
10: AH4 (SOFTWARE)
11: AH5 (SOFTWARE)
12: AH6 (SOFTWARE)
13: AH7 (SOFTWARE)
14: AH8 (SOFTWARE)
15: AH9 (SOFTWARE)
16: AI1 (SOFTWARE)
17: AI2 (SOFTWARE)
18: AI3 (SOFTWARE)
19: AI4 (SOFTWARE)
20: AI5 (SOFTWARE)
21: AI6 (SOFTWARE)
22: AI7 (SOFTWARE)
23: AI8 (SOFTWARE)
24: AI9 (SOFTWARE)
25: AJ1 (SOFTWARE)
26: AJ2 (SOFTWARE)
27: AJ3 (SOFTWARE)
28: AJ4 (SOFTWARE)
29: AJ5 (SOFTWARE)
30: AJ6 (SOFTWARE)
31: AJ7 (SOFTWARE)
32: AJ8 (SOFTWARE)
33: AJ9 (SOFTWARE)
34: AK1 (SOFTWARE)
35: AK2 (SOFTWARE)
36: AK3 (SOFTWARE)
37: AK4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AG4
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , GLY G:390 , MET G:392 , ASP G:459 , GLU G:461 , LEU G:487 , THR G:488 , GLY G:489 , LEU G:492 , ALA G:577 , ZN G:1002 , ZN G:1003 , CO3 G:1004
binding site for residue 4U6 G 1001
02
AG5
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , 4U6 G:1001 , ZN G:1003
binding site for residue ZN G 1002
03
AG6
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , 4U6 G:1001 , ZN G:1002
binding site for residue ZN G 1003
04
AG7
SOFTWARE
LYS G:374 , ALA G:460 , GLY G:462 , ARG G:463 , LEU G:487 , 4U6 G:1001
binding site for residue CO3 G 1004
05
AG8
SOFTWARE
TYR G:103 , ASN G:104 , HIS G:108 , TYR G:411
binding site for residue 1PE G 1005
06
AG9
SOFTWARE
TYR A:115 , ASN A:122 , GLU A:124 , TYR A:270 , TYR G:115 , ASN G:122 , TYR G:270 , 1PE G:1007 , HOH G:1140
binding site for residue 1PE G 1006
07
AH1
SOFTWARE
ASN A:122 , ASN G:122 , TYR G:270 , 1PE G:1006 , HOH G:1154
binding site for residue 1PE G 1007
08
AH2
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
binding site for residue SO4 G 1008
09
AH3
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , GLY H:390 , MET H:392 , PHE H:398 , ASP H:459 , GLU H:461 , LEU H:487 , GLY H:489 , LEU H:492 , ALA H:577 , ZN H:1002 , ZN H:1003 , CO3 H:1004
binding site for residue 4U6 H 1001
10
AH4
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , 4U6 H:1001 , ZN H:1003
binding site for residue ZN H 1002
11
AH5
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , 4U6 H:1001 , ZN H:1002
binding site for residue ZN H 1003
12
AH6
SOFTWARE
LYS H:374 , ALA H:460 , GLU H:461 , GLY H:462 , ARG H:463 , LEU H:487 , 4U6 H:1001
binding site for residue CO3 H 1004
13
AH7
SOFTWARE
TYR H:103 , GLU H:316 , LYS H:320
binding site for residue 1PE H 1005
14
AH8
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , GLY I:390 , SER I:391 , MET I:392 , PHE I:398 , ASP I:459 , GLU I:461 , LEU I:487 , THR I:488 , GLY I:489 , LEU I:492 , ALA I:577 , ZN I:1002 , ZN I:1003 , CO3 I:1004
binding site for residue 4U6 I 1001
15
AH9
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , 4U6 I:1001 , ZN I:1003
binding site for residue ZN I 1002
16
AI1
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , 4U6 I:1001 , ZN I:1002
binding site for residue ZN I 1003
17
AI2
SOFTWARE
LYS I:374 , ALA I:460 , GLY I:462 , ARG I:463 , LEU I:487 , 4U6 I:1001
binding site for residue CO3 I 1004
18
AI3
SOFTWARE
TYR I:103 , GLU I:316 , LYS I:320
binding site for residue 1PE I 1005
19
AI4
SOFTWARE
TYR I:103 , HIS I:108 , LYS I:320 , TYR I:411
binding site for residue 1PE I 1006
20
AI5
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , GLY J:390 , MET J:392 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , LEU J:492 , ALA J:577 , ZN J:1002 , ZN J:1003 , CO3 J:1004
binding site for residue 4U6 J 1001
21
AI6
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , 4U6 J:1001 , ZN J:1003
binding site for residue ZN J 1002
22
AI7
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , 4U6 J:1001 , ZN J:1002
binding site for residue ZN J 1003
23
AI8
SOFTWARE
LYS J:374 , ALA J:460 , GLU J:461 , GLY J:462 , ARG J:463 , LEU J:487 , 4U6 J:1001
binding site for residue CO3 J 1004
24
AI9
SOFTWARE
TYR J:103 , ASN J:104 , HIS J:108 , PHE J:289 , LYS J:320 , TYR J:411 , HOH J:1119
binding site for residue 1PE J 1005
25
AJ1
SOFTWARE
GLU J:102 , TYR J:103 , ASN J:104
binding site for residue SO4 J 1006
26
AJ2
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , GLY K:390 , MET K:392 , ASP K:459 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , LEU K:492 , ALA K:577 , ZN K:1002 , ZN K:1003 , CO3 K:1004 , HOH K:1127
binding site for residue 4U6 K 1001
27
AJ3
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , 4U6 K:1001 , ZN K:1003 , HOH K:1127
binding site for residue ZN K 1002
28
AJ4
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , 4U6 K:1001 , ZN K:1002
binding site for residue ZN K 1003
29
AJ5
SOFTWARE
LYS K:374 , ALA K:460 , GLY K:462 , ARG K:463 , LEU K:487 , 4U6 K:1001
binding site for residue CO3 K 1004
30
AJ6
SOFTWARE
TYR K:103 , HIS K:108 , TYR K:411
binding site for residue 1PE K 1005
31
AJ7
SOFTWARE
PHE I:156 , LYS I:164 , TYR K:176 , MET K:177 , PHE K:178 , SER K:184
binding site for residue SO4 K 1006
32
AJ8
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , GLY L:390 , MET L:392 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , LEU L:492 , ALA L:577 , ZN L:1002 , ZN L:1003 , CO3 L:1004
binding site for residue 4U6 L 1001
33
AJ9
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , 4U6 L:1001 , ZN L:1003
binding site for residue ZN L 1002
34
AK1
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , 4U6 L:1001 , ZN L:1002
binding site for residue ZN L 1003
35
AK2
SOFTWARE
LYS L:374 , ALA L:460 , GLU L:461 , GLY L:462 , ARG L:463 , LEU L:487 , 4U6 L:1001
binding site for residue CO3 L 1004
36
AK3
SOFTWARE
TYR L:103 , ASN L:104 , LYS L:320 , TYR L:411 , HOH L:1163
binding site for residue 1PE L 1005
37
AK4
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
binding site for residue SO4 L 1006
[
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SAPs(SNPs)/Variants
(0, 0)
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