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4ZY2
Biol. Unit 2
Info
Asym.Unit (2.0 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
Biol.Unit 2, α-C (1.0 MB)
Biol.Unit 2 (1.0 MB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF PFA-M17 IN COMPLEX WITH HYDROXAMIC ACID-BASED INHIBITOR 10O
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
21 May 15 (Deposition) - 30 Mar 16 (Release) - 30 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Hydroxamic Acid, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, N. B. Vinh, S. N. Mistry, R. S. Bamert, C. Ruggeri, J. P. Holleran, S. Loganathan, A. Paiardini, S. A. Charman, A. K. Powell, V. M. Avery, S. Mcgowan, P. J. Scammells
Potent Dual Inhibitors Of Plasmodium Falciparum M1 And M17 Aminopeptidases Through Optimization Of S1 Pocket Interactions.
Eur. J. Med. Chem. V. 110 43 2016
[
close entry info
]
Hetero Components
(5, 50)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1aa: PENTAETHYLENE GLYCOL (1PEaa)
1ab: PENTAETHYLENE GLYCOL (1PEab)
1ac: PENTAETHYLENE GLYCOL (1PEac)
1ad: PENTAETHYLENE GLYCOL (1PEad)
1ae: PENTAETHYLENE GLYCOL (1PEae)
1af: PENTAETHYLENE GLYCOL (1PEaf)
1ag: PENTAETHYLENE GLYCOL (1PEag)
1ah: PENTAETHYLENE GLYCOL (1PEah)
1ai: PENTAETHYLENE GLYCOL (1PEai)
1aj: PENTAETHYLENE GLYCOL (1PEaj)
1ak: PENTAETHYLENE GLYCOL (1PEak)
1al: PENTAETHYLENE GLYCOL (1PEal)
1am: PENTAETHYLENE GLYCOL (1PEam)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
1o: PENTAETHYLENE GLYCOL (1PEo)
1p: PENTAETHYLENE GLYCOL (1PEp)
1q: PENTAETHYLENE GLYCOL (1PEq)
1r: PENTAETHYLENE GLYCOL (1PEr)
1s: PENTAETHYLENE GLYCOL (1PEs)
1t: PENTAETHYLENE GLYCOL (1PEt)
1u: PENTAETHYLENE GLYCOL (1PEu)
1v: PENTAETHYLENE GLYCOL (1PEv)
1w: PENTAETHYLENE GLYCOL (1PEw)
1x: PENTAETHYLENE GLYCOL (1PEx)
1y: PENTAETHYLENE GLYCOL (1PEy)
1z: PENTAETHYLENE GLYCOL (1PEz)
2a: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLa)
2b: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLb)
2c: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLc)
2d: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLd)
2e: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLe)
2f: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLf)
2g: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLg)
2h: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLh)
2i: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLi)
2j: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLj)
2k: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLk)
2l: N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(... (4TLl)
3a: CARBONATE ION (CO3a)
3b: CARBONATE ION (CO3b)
3c: CARBONATE ION (CO3c)
3d: CARBONATE ION (CO3d)
3e: CARBONATE ION (CO3e)
3f: CARBONATE ION (CO3f)
3g: CARBONATE ION (CO3g)
3h: CARBONATE ION (CO3h)
3i: CARBONATE ION (CO3i)
3j: CARBONATE ION (CO3j)
3k: CARBONATE ION (CO3k)
3l: CARBONATE ION (CO3l)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
5a: SULFATE ION (SO4a)
5aa: SULFATE ION (SO4aa)
5ab: SULFATE ION (SO4ab)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
5v: SULFATE ION (SO4v)
5w: SULFATE ION (SO4w)
5x: SULFATE ION (SO4x)
5y: SULFATE ION (SO4y)
5z: SULFATE ION (SO4z)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
6j: ZINC ION (ZNj)
6k: ZINC ION (ZNk)
6l: ZINC ION (ZNl)
6m: ZINC ION (ZNm)
6n: ZINC ION (ZNn)
6o: ZINC ION (ZNo)
6p: ZINC ION (ZNp)
6q: ZINC ION (ZNq)
6r: ZINC ION (ZNr)
6s: ZINC ION (ZNs)
6t: ZINC ION (ZNt)
6u: ZINC ION (ZNu)
6v: ZINC ION (ZNv)
6w: ZINC ION (ZNw)
6x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
21
Ligand/Ion
PENTAETHYLENE GLYCOL
2
4TL
6
Ligand/Ion
N-[(1R)-2-(HYDROXYAMINO)-2-OXO-1-(3',4',5'-TRIFLUOROBIPHENYL-4-YL)ETHYL]-2,2-DIMETHYLPROPANAMIDE
3
CO3
6
Ligand/Ion
CARBONATE ION
4
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
5
SO4
15
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(65, 65)
Info
All Sites
01: AD5 (SOFTWARE)
02: AD6 (SOFTWARE)
03: AF6 (SOFTWARE)
04: AI3 (SOFTWARE)
05: AI4 (SOFTWARE)
06: AI5 (SOFTWARE)
07: AI6 (SOFTWARE)
08: AI7 (SOFTWARE)
09: AI8 (SOFTWARE)
10: AI9 (SOFTWARE)
11: AJ1 (SOFTWARE)
12: AJ2 (SOFTWARE)
13: AJ3 (SOFTWARE)
14: AJ4 (SOFTWARE)
15: AJ5 (SOFTWARE)
16: AJ6 (SOFTWARE)
17: AJ7 (SOFTWARE)
18: AJ8 (SOFTWARE)
19: AJ9 (SOFTWARE)
20: AK1 (SOFTWARE)
21: AK2 (SOFTWARE)
22: AK3 (SOFTWARE)
23: AK4 (SOFTWARE)
24: AK5 (SOFTWARE)
25: AK6 (SOFTWARE)
26: AK7 (SOFTWARE)
27: AK8 (SOFTWARE)
28: AK9 (SOFTWARE)
29: AL1 (SOFTWARE)
30: AL2 (SOFTWARE)
31: AL3 (SOFTWARE)
32: AL4 (SOFTWARE)
33: AL5 (SOFTWARE)
34: AL6 (SOFTWARE)
35: AL7 (SOFTWARE)
36: AL8 (SOFTWARE)
37: AL9 (SOFTWARE)
38: AM1 (SOFTWARE)
39: AM2 (SOFTWARE)
40: AM3 (SOFTWARE)
41: AM4 (SOFTWARE)
42: AM5 (SOFTWARE)
43: AM6 (SOFTWARE)
44: AM7 (SOFTWARE)
45: AM8 (SOFTWARE)
46: AM9 (SOFTWARE)
47: AN1 (SOFTWARE)
48: AN2 (SOFTWARE)
49: AN3 (SOFTWARE)
50: AN4 (SOFTWARE)
51: AN5 (SOFTWARE)
52: AN6 (SOFTWARE)
53: AN7 (SOFTWARE)
54: AN8 (SOFTWARE)
55: AN9 (SOFTWARE)
56: AO1 (SOFTWARE)
57: AO2 (SOFTWARE)
58: AO3 (SOFTWARE)
59: AO4 (SOFTWARE)
60: AO5 (SOFTWARE)
61: AO6 (SOFTWARE)
62: AO7 (SOFTWARE)
63: AO8 (SOFTWARE)
64: AO9 (SOFTWARE)
65: AP1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AD5
SOFTWARE
TYR B:103 , GLU B:316 , LYS B:320 , 1PE B:1006 , 1PE H:1008
binding site for residue 1PE B 1005
02
AD6
SOFTWARE
TYR B:103 , HIS B:108 , LYS B:320 , 1PE B:1005 , 1PE H:1009
binding site for residue 1PE B 1006
03
AF6
SOFTWARE
LYS D:111 , GLU L:282 , ARG L:285 , 1PE L:1005
binding site for residue 1PE D 1007
04
AI3
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , ZN G:1003 , 4TL G:1010 , HOH G:1274
binding site for residue ZN G 1001
05
AI4
SOFTWARE
LYS G:374 , ALA G:460 , GLY G:462 , ARG G:463 , LEU G:487 , 4TL G:1010
binding site for residue CO3 G 1002
06
AI5
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , ZN G:1001 , 4TL G:1010
binding site for residue ZN G 1003
07
AI6
SOFTWARE
GLU G:102 , TYR G:103 , ASN G:104 , 1PE G:1009 , HOH G:1331 , HOH G:1385
binding site for residue SO4 G 1004
08
AI7
SOFTWARE
GLY G:126 , LEU G:219 , SER G:220 , HOH G:1131 , HOH G:1205 , LYS J:164
binding site for residue SO4 G 1005
09
AI8
SOFTWARE
TYR G:244 , ASP G:249 , TYR G:292 , SER G:295 , LYS G:587 , HOH G:1251 , TYR I:541
binding site for residue SO4 G 1006
10
AI9
SOFTWARE
TYR A:115 , ASN A:122 , GLU A:124 , TYR A:270 , TYR G:115 , ASN G:122 , GLU G:124 , TYR G:270 , 1PE G:1008 , HOH G:1151
binding site for residue 1PE G 1007
11
AJ1
SOFTWARE
ASN A:122 , ASN A:149 , ASN G:122 , 1PE G:1007 , HOH G:1132
binding site for residue 1PE G 1008
12
AJ2
SOFTWARE
TYR G:103 , GLU G:316 , LYS G:320 , SO4 G:1004
binding site for residue 1PE G 1009
13
AJ3
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , GLY G:390 , MET G:392 , LEU G:395 , ASP G:459 , GLU G:461 , LEU G:487 , THR G:488 , GLY G:489 , LEU G:492 , ALA G:577 , PHE G:583 , ZN G:1001 , CO3 G:1002 , ZN G:1003 , HOH G:1177 , HOH G:1274
binding site for residue 4TL G 1010
14
AJ4
SOFTWARE
TYR G:103 , ASN G:104 , PHE G:289 , LYS G:320
binding site for residue 1PE G 1011
15
AJ5
SOFTWARE
SER G:93 , LEU G:94 , ASP G:95 , PRO G:96 , THR G:97 , TYR G:304
binding site for residue 1PE G 1012
16
AJ6
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , ZN H:1003 , 4TL H:1006 , HOH H:1177
binding site for residue ZN H 1001
17
AJ7
SOFTWARE
LYS H:374 , ALA H:460 , GLY H:462 , ARG H:463 , LEU H:487 , 4TL H:1006
binding site for residue CO3 H 1002
18
AJ8
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , ZN H:1001 , 4TL H:1006
binding site for residue ZN H 1003
19
AJ9
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , HOH H:1287 , SER I:435 , LYS I:436
binding site for residue SO4 H 1004
20
AK1
SOFTWARE
SER H:86 , GLU H:87 , VAL H:88 , THR H:97 , ASN H:312 , HOH H:1131
binding site for residue SO4 H 1005
21
AK2
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , GLY H:390 , MET H:392 , ASP H:459 , GLU H:461 , LEU H:487 , THR H:488 , GLY H:489 , LEU H:492 , ALA H:577 , PHE H:583 , ZN H:1001 , CO3 H:1002 , ZN H:1003 , HOH H:1165 , HOH H:1177
binding site for residue 4TL H 1006
22
AK3
SOFTWARE
TYR G:541 , TYR H:244 , ASP H:249 , TYR H:292 , SER H:295 , LYS H:587 , HOH H:1175
binding site for residue DMS H 1007
23
AK4
SOFTWARE
1PE B:1005 , TYR H:103 , HIS H:108 , PHE H:289 , LYS H:320 , TYR H:411
binding site for residue 1PE H 1008
24
AK5
SOFTWARE
1PE B:1006 , TYR H:103 , GLU H:316 , LYS H:320
binding site for residue 1PE H 1009
25
AK6
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , ZN I:1003 , 4TL I:1012
binding site for residue ZN I 1001
26
AK7
SOFTWARE
LYS I:374 , ALA I:460 , GLY I:462 , ARG I:463 , LEU I:487 , 4TL I:1012
binding site for residue CO3 I 1002
27
AK8
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , ZN I:1001 , 4TL I:1012 , HOH I:1216
binding site for residue ZN I 1003
28
AK9
SOFTWARE
GLU I:102 , TYR I:103 , ASN I:104 , 1PE I:1009 , HOH I:1229
binding site for residue SO4 I 1004
29
AL1
SOFTWARE
GLY I:126 , LEU I:219 , SER I:220 , HOH I:1137 , HOH I:1305
binding site for residue SO4 I 1005
30
AL2
SOFTWARE
SER I:86 , VAL I:88 , THR I:97 , ASN I:312 , HOH I:1131
binding site for residue SO4 I 1006
31
AL3
SOFTWARE
PHE I:156 , ASN I:161 , LYS I:164 , TYR K:176 , PHE K:178 , SER K:184
binding site for residue SO4 I 1007
32
AL4
SOFTWARE
LEU I:214 , HIS I:215 , ASP I:216 , ASN I:260 , MET I:261 , GLU I:262 , HOH I:1345
binding site for residue SO4 I 1008
33
AL5
SOFTWARE
TYR I:103 , GLU I:316 , LYS I:320 , SO4 I:1004 , HOH I:1102 , HOH I:1342
binding site for residue 1PE I 1009
34
AL6
SOFTWARE
TYR I:103 , ASN I:104 , HIS I:108 , PHE I:289 , TYR I:411
binding site for residue 1PE I 1010
35
AL7
SOFTWARE
ILE I:529 , ILE I:530 , ASN I:531 , GLU I:532 , TYR J:499 , HOH J:1166
binding site for residue 1PE I 1011
36
AL8
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , GLY I:390 , MET I:392 , ASP I:459 , GLU I:461 , LEU I:487 , THR I:488 , GLY I:489 , ALA I:577 , PHE I:583 , ZN I:1001 , CO3 I:1002 , ZN I:1003 , HOH I:1144 , HOH I:1216
binding site for residue 4TL I 1012
37
AL9
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , ZN J:1003 , 4TL J:1011 , HOH J:1193
binding site for residue ZN J 1001
38
AM1
SOFTWARE
LYS J:374 , ALA J:460 , GLY J:462 , ARG J:463 , LEU J:487 , 4TL J:1011
binding site for residue CO3 J 1002
39
AM2
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , ZN J:1001 , 4TL J:1011
binding site for residue ZN J 1003
40
AM3
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
binding site for residue SO4 J 1004
41
AM4
SOFTWARE
ILE J:101 , TYR J:103 , ASN J:104 , 1PE J:1008
binding site for residue SO4 J 1005
42
AM5
SOFTWARE
PHE G:156 , ASN G:161 , TYR J:176 , PHE J:178 , SER J:184 , HOH J:1143
binding site for residue SO4 J 1006
43
AM6
SOFTWARE
TYR J:103 , ASN J:104 , HIS J:108 , PHE J:289 , LYS J:320 , LEU J:321 , TYR J:411
binding site for residue 1PE J 1007
44
AM7
SOFTWARE
TYR J:103 , GLU J:316 , LYS J:320 , SO4 J:1005
binding site for residue 1PE J 1008
45
AM8
SOFTWARE
SER J:517 , LYS J:518 , VAL J:524 , TRP J:525 , HOH J:1297
binding site for residue 1PE J 1009
46
AM9
SOFTWARE
SER J:93 , LEU J:94 , ASP J:95 , THR J:97 , TYR J:304
binding site for residue 1PE J 1010
47
AN1
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , GLY J:390 , MET J:392 , LEU J:395 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , LEU J:492 , ALA J:577 , PHE J:583 , ZN J:1001 , CO3 J:1002 , ZN J:1003 , HOH J:1136 , HOH J:1193
binding site for residue 4TL J 1011
48
AN2
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , ZN K:1003 , 4TL K:1008 , HOH K:1157
binding site for residue ZN K 1001
49
AN3
SOFTWARE
LYS K:374 , ALA K:460 , GLU K:461 , GLY K:462 , ARG K:463 , LEU K:487 , 4TL K:1008
binding site for residue CO3 K 1002
50
AN4
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , ZN K:1001 , 4TL K:1008
binding site for residue ZN K 1003
51
AN5
SOFTWARE
ILE K:101 , TYR K:103 , ASN K:104 , 1PE K:1007 , HOH K:1127
binding site for residue SO4 K 1004
52
AN6
SOFTWARE
TYR K:103 , HIS K:108 , PHE K:289 , LYS K:320 , TYR K:411 , HOH K:1111
binding site for residue 1PE K 1005
53
AN7
SOFTWARE
LEU K:94 , ASP K:95
binding site for residue 1PE K 1006
54
AN8
SOFTWARE
TYR K:103 , GLU K:316 , LYS K:320 , SO4 K:1004
binding site for residue 1PE K 1007
55
AN9
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , GLY K:390 , SER K:391 , MET K:392 , ASP K:459 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , LEU K:492 , ALA K:577 , PHE K:583 , ZN K:1001 , CO3 K:1002 , ZN K:1003 , HOH K:1157 , HOH K:1162
binding site for residue 4TL K 1008
56
AO1
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , ZN L:1003 , 4TL L:1008
binding site for residue ZN L 1001
57
AO2
SOFTWARE
LYS L:374 , ALA L:460 , GLY L:462 , ARG L:463 , LEU L:487 , 4TL L:1008
binding site for residue CO3 L 1002
58
AO3
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , ZN L:1001 , 4TL L:1008 , HOH L:1193
binding site for residue ZN L 1003
59
AO4
SOFTWARE
TYR L:103 , ASN L:104
binding site for residue SO4 L 1004
60
AO5
SOFTWARE
1PE D:1007 , TYR L:103 , ASN L:104 , HIS L:108 , LYS L:320 , TYR L:411 , 1PE L:1010
binding site for residue 1PE L 1005
61
AO6
SOFTWARE
SER J:254 , ASN L:449 , LYS L:451 , ASP L:543 , GLN L:567 , HOH L:1106
binding site for residue 1PE L 1006
62
AO7
SOFTWARE
TRP G:526 , TRP L:526
binding site for residue 1PE L 1007
63
AO8
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , GLY L:390 , MET L:392 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , ALA L:577 , PHE L:583 , ZN L:1001 , CO3 L:1002 , ZN L:1003 , HOH L:1171 , HOH L:1193
binding site for residue 4TL L 1008
64
AO9
SOFTWARE
SER L:86 , VAL L:88 , THR L:97
binding site for residue DMS L 1009
65
AP1
SOFTWARE
TYR L:103 , ASN L:104 , GLU L:316 , LYS L:320 , 1PE L:1005
binding site for residue 1PE L 1010
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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Atom Selection
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all
)
Protein
Nucleic
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Sidechain
Hetero
Ligand
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All Atoms
Protein & NOT Variant
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Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
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Stereo
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (2.0 MB)
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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